Evidence map›Paper›PMID 42098304›Full record

ArticleThe EMBO journal2026

SLX4IP limits replication stress globally and at ALT telomeres.

Jessica Spindler, Francesca Pandolfo, Anna Eva Koch, Priscilla Piccirillo, Drew Jordahl, Nikhil Venkatesh, Dhruthi Suresh, K R Ylvisaker, Anita Jopkiewicz, Johanna Bihler and 9 more

Abstract read
In one paragraph

Article in The EMBO journal, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Jessica Spindler *Max Planck Institute for Biology of Ageing, Cologne, Germany.
Francesca Pandolfo *Max Planck Institute for Biology of Ageing, Cologne, Germany.
Anna Eva KochCenter for Molecular Medicine Cologne (CMMC), University of Cologne, Cologne, Germany.
Priscilla PiccirilloCenter for Molecular Medicine Cologne (CMMC), University of Cologne, Cologne, Germany.
Drew JordahlDepartment of Biomolecular Chemistry, School of Medicine and Public Health, University of Wisconsin-Madison, Madison, WI, USA.ORCID http://orcid.org/0000-0002-0075-318X
Nikhil VenkateshMax Planck Institute for Biology of Ageing, Cologne, Germany.ORCID http://orcid.org/0009-0004-7304-4028
Dhruthi SureshDepartment of Comparative Biosciences, School of Veterinary Medicine, University of Wisconsin-Madison, Madison, WI, USA.ORCID http://orcid.org/0000-0002-0593-5281
K R YlvisakerDepartment of Comparative Biosciences, School of Veterinary Medicine, University of Wisconsin-Madison, Madison, WI, USA.ORCID http://orcid.org/0009-0004-1023-6962
Anita JopkiewiczMax Planck Institute for Biology of Ageing, Cologne, Germany.
Johanna BihlerMax Planck Institute for Biology of Ageing, Cologne, Germany.ORCID http://orcid.org/0009-0008-3407-6616
Sandra BuschbaumMax Planck Institute for Biology of Ageing, Cologne, Germany.
Marcel MorgensternDepartment of Biomolecular Chemistry, School of Medicine and Public Health, University of Wisconsin-Madison, Madison, WI, USA.ORCID http://orcid.org/0000-0001-6880-4839
Katherine A OvermyerDepartment of Biomolecular Chemistry, School of Medicine and Public Health, University of Wisconsin-Madison, Madison, WI, USA.ORCID http://orcid.org/0000-0002-1929-1229
Estelle VincendeauMax Planck Institute for Biology of Ageing, Cologne, Germany.
Joshua J CoonDepartment of Biomolecular Chemistry, School of Medicine and Public Health, University of Wisconsin-Madison, Madison, WI, USA.
Pei-Chi WeiBrain Mosaicism and Tumorigenesis, German Cancer Research Center, Heidelberg, Germany.ORCID http://orcid.org/0000-0002-3309-0511
Robert Hänsel-HertschCenter for Molecular Medicine Cologne (CMMC), University of Cologne, Cologne, Germany.ORCID http://orcid.org/0000-0002-2835-4471
Kavi P M MehtaDepartment of Comparative Biosciences, School of Veterinary Medicine, University of Wisconsin-Madison, Madison, WI, USA. kmehta@wisc.edu.ORCID http://orcid.org/0000-0002-2582-073X
Stephanie PanierMax Planck Institute for Biology of Ageing, Cologne, Germany. panier@age.mpg.de.ORCID http://orcid.org/0000-0002-7941-2846

Funding

UW COMPREHENSIVE CANCER CENTER SUPPORTP30CA014520 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI Justine Yang Bruce · 1985 to 2026
$142.6M
TR&D 2 Metabolic Labels for Ultraplexed Protein Quantification p. 453P41GM108538 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI COON, JOSHUA J · 2016 to 2025
$13.1M
Biotechnology Training ProgramT32GM135066 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI SCOTT M. COYLE, BRIAN G FOX · 2020 to 2026
$7.0M
The mutagenic consequences of replication-coupled DNA repair mechanismsR00ES034058 · NIEHS · UNIVERSITY OF WISCONSIN-MADISON · PI MEHTA, KAVI · 2023 to 2025
$747k
Deutsche Forschungsgemeinschaft (DFG) 413326622Deutsche Forschungsgemeinschaft (DFG) 496650118Deutsche Forschungsgemeinschaft (DFG) 504972506Deutsche Forschungsgemeinschaft (DFG) 520471345European Commission (EC) 949990Fritz Thyssen Stiftung (Thyssen Foundation) 10.22.1.010MNHHS | National Institutes of Health (NIH) NIEHS R00ES034058HHS | National Institutes of Health (NIH) P41GM108538HHS | NIH | National Cancer Institute (NCI) P30CA014520HHS | NIH | National Institute of General Medical Sciences (NIGMS) T32GM135066Ministry of Culture and Science of the State of North-Rhine-Westphalia CANTARNCI NIH HHS P30 CA014520NIEHS NIH HHS R00 ES034058NIGMS NIH HHS P41 GM108538NSF | National Science Foundation Graduate Research Fellowship Program (GRFP) 2137424UoC | Center for Molecular Medicine Cologne, University of Cologne (CMMC, UoC) JRG-X
6 · The paper itself

Abstract

Faithful DNA replication is essential for genome stability, yet replication forks face constant stress. The Bloom syndrome helicase (BLM) safeguards fork integrity, but excessive BLM activity can itself induce replication stress. We identify SLX4IP as a genome-wide regulator that restrains BLM to maintain replication fork stability. SLX4IP localizes broadly across chromatin with recruitment enhanced under replication stress. Loss of SLX4IP slows replication forks, remodels the replisome, and generates post-replicative single-stranded DNA gaps that are accompanied by elevated nuclear ADP ribose, reflecting compromised replication integrity. These defects are driven by dysregulated BLM activity, establishing SLX4IP as a negative regulator of BLM-dependent replication stress. At ALT telomeres, SLX4IP deficiency triggers ATR signaling, telomere fragility, and accumulation of ALT-associated PML bodies. Here, SLX4IP functions in parallel with FANCM to restrain BLM at ALT telomeres, with co-depletion of SLX4IP and FANCM causing synthetic lethality in ALT-positive cells, a phenotype fully rescued by BLM loss. Together, our results define SLX4IP as a critical genome-wide regulator of replication fork integrity and reveal SLX4IP as a potential vulnerability in ALT-positive cancers.

Indexed as

Carrier ProteinsDNA ReplicationRecQ HelicasesTelomereHumansBloom syndrome proteinCarrier ProteinsRecQ Helicases

Identifiers

PMID42098304
PMCPMC13269807

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.