Evidence map›Paper›PMID 42095547›Full record

ArticleCancer research2026

Arginine Deprivation of ASS1-Deficient Cancers Drives Mistranslation and Shared Neoepitope Production.

Remco Nagel, Adva Kochavi, Karine Flem-Karlsen, Mrittika Adhikary, Yali Gal-On, Maria G Klaoudatou, Julien Champagne, Lorenzo Valcanover, Heyilimu Palashati, Morten M Nielsen and 10 more

Abstract read
In one paragraph

Article in Cancer research, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Remco NagelDivision of Oncogenomics, Oncode Institute, The Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID 0009-0003-9459-0741
Adva KochaviDivision of Oncogenomics, Oncode Institute, The Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID 0000-0002-6274-1942
Karine Flem-KarlsenDepartment of Cancer Immunology, Oslo University Hospital, Radiumhospitalet, Oslo, Norway.ORCID 0000-0001-8405-3406
Mrittika AdhikaryDivision of Oncogenomics, Oncode Institute, The Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID 0009-0003-3457-3771
Yali Gal-OnDivision of Oncogenomics, Oncode Institute, The Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID 0009-0003-9182-1022
Maria G KlaoudatouDivision of Oncogenomics, Oncode Institute, The Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID 0009-0005-3534-123X
Julien ChampagneDivision of Oncogenomics, Oncode Institute, The Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID 0000-0001-8460-858X
Lorenzo ValcanoverDivision of Oncogenomics, Oncode Institute, The Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID 0009-0006-7234-6694
Heyilimu PalashatiDepartment of Cancer Immunology, Oslo University Hospital, Radiumhospitalet, Oslo, Norway.ORCID 0000-0001-6903-2180
Morten M NielsenDepartment of Cancer Immunology, Oslo University Hospital, Radiumhospitalet, Oslo, Norway.ORCID 0000-0001-5432-2396
Xiaodong FengDivision of Oncogenomics, Oncode Institute, The Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID 0000-0002-0928-1932
Pierre-Rene KörnerDivision of Oncogenomics, Oncode Institute, The Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID 0000-0002-9964-234X
Lisanne GiebelDivision of Oncogenomics, Oncode Institute, The Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID 0000-0002-9108-3256
Weiwen YangDepartment of Cancer Immunology, Oslo University Hospital, Radiumhospitalet, Oslo, Norway.ORCID 0000-0003-4117-0893
Arno VeldsNKI Genomics Core Facility, The Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID 0000-0003-4333-8872
Liesbeth HoekmanNKI Proteomics Facility, The Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID 0000-0002-3552-6390
Onno B BleijerveldNKI Proteomics Facility, The Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID 0000-0002-9395-2347
Olaf van TellingenDivision of Pharmacology, The Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID 0000-0002-1037-6269
Johanna OlweusDepartment of Cancer Immunology, Oslo University Hospital, Radiumhospitalet, Oslo, Norway.ORCID 0000-0002-1898-3100
Reuven AgamiDivision of Oncogenomics, Oncode Institute, The Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID 0000-0002-2848-2473

Funding

Cancer Research UK (CRUK) CGCATF-2025/100002Helse Sør-Øst RHF (sorost) 2021074HORIZON EUROPE European Innovation Council (EIC) 865805HORIZON EUROPE European Research Council (ERC) Horizon ERC-2023-ADG-101141245Kreftforeningen (NCS) 216135-2020KWF Kankerbestrijding (KWF) 15986Nederlandse Organisatie voor Wetenschappelijk Onderzoek (NWO) OCENW.M.22.001-16221Nederlandse Organisatie voor Wetenschappelijk Onderzoek (NWO) X-omics InitiativeNorges Forskningsråd (Forskningsrådet) 316060Norges Forskningsråd (Forskningsrådet) 332727Novo Nordisk Foundation Center for Basic Metabolic Research (NovoNordisk Foundation Center for Basic Metabolic Research)
6 · The paper itself

Abstract

Arginine biosynthesis is frequently suppressed in cancer because of the loss of argininosuccinate synthase 1 (ASS1) expression, rendering cancer cells reliant on extracellular arginine. This feature has driven the development of systemic arginine-depleting strategies, which are clinically safe but offer limited clinical benefit. In this study, we demonstrated that under arginine scarcity, cancer cells with low ASS1 expression resort to aberrant mRNA translation, characterized by ribosomal frameshifts and amino acid misincorporations. Although aberrant proteins originated from most arginine codons, the predominant effect was observed at AGA. This codon preference was caused by a selective decrease in tRNAArg (UCU) levels following arginine deprivation, linked to methyltransferase-like 1 (METTL1)-mediated tRNA modification. Proteomics and immunopeptidomics analyses validated that arginine shortage induced aberrant protein production at the endogenous level. T-cell receptor (TCR) T cells that specifically recognize these HLA-presented mistranslated peptides efficiently killed cancer cells after arginine deprivation. These results lay the foundation for improved cancer therapies by combining systemic arginine-depleting strategies with TCR-based targeting of nonclassical neoantigens. SIGNIFICANCE: Aberrant protein production induced by arginine deprivation in ASS1-low cancers leads to production of neoantigens that represent promising targets for TCR-T cell therapies.

Indexed as

ArginineArgininosuccinate SynthaseNeoplasmsProtein BiosynthesisCell Line, TumorHumansReceptors, Antigen, T-CellRNA, Transfer, ArgArginineArgininosuccinate SynthaseReceptors, Antigen, T-CellRNA, Transfer, Arg

Identifiers

PMID42095547
PMCPMC13370116

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.