Evidence map›Paper›PMID 42094445›Full record

ArticlebioRxiv : the preprint server for biology2026

PARP1-mediated 5' flap dynamics facilitate Okazaki fragment maturation.

Guojun Shi, Yixing Wang, Yao Yan, Kejiao Li, Lingzhi Ma, Yi Lei, Yingying Wang, Nancy Manriquez, Mian Zhou, Shan Zha and 2 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Guojun ShiDepartment of Cancer Genetics and Epigenetics, City of Hope Beckman Research Institute, 1500 East Duarte Road, Duarte, CA 91010, USA.
Yixing WangDepartment of Cancer Genetics and Epigenetics, City of Hope Beckman Research Institute, 1500 East Duarte Road, Duarte, CA 91010, USA.
Yao YanDepartment of Cancer Genetics and Epigenetics, City of Hope Beckman Research Institute, 1500 East Duarte Road, Duarte, CA 91010, USA.
Kejiao LiDepartment of Cancer Genetics and Epigenetics, City of Hope Beckman Research Institute, 1500 East Duarte Road, Duarte, CA 91010, USA.
Lingzhi MaDepartment of Cancer Genetics and Epigenetics, City of Hope Beckman Research Institute, 1500 East Duarte Road, Duarte, CA 91010, USA.
Yi LeiDepartment of Cancer Genetics and Epigenetics, City of Hope Beckman Research Institute, 1500 East Duarte Road, Duarte, CA 91010, USA.
Yingying WangDepartment of Cancer Genetics and Epigenetics, City of Hope Beckman Research Institute, 1500 East Duarte Road, Duarte, CA 91010, USA.
Nancy ManriquezDepartment of Cancer Genetics and Epigenetics, City of Hope Beckman Research Institute, 1500 East Duarte Road, Duarte, CA 91010, USA.
Mian ZhouDepartment of Cancer Genetics and Epigenetics, City of Hope Beckman Research Institute, 1500 East Duarte Road, Duarte, CA 91010, USA.
Shan ZhaInstitute for Cancer Genetics, Department of Pathology and Cell Biology, College of Physicians and Surgeons, Columbia University, New York City, NY 10032, USA.
Li ZhengDepartment of Cancer Genetics and Epigenetics, City of Hope Beckman Research Institute, 1500 East Duarte Road, Duarte, CA 91010, USA.
Binghui ShenDepartment of Cancer Genetics and Epigenetics, City of Hope Beckman Research Institute, 1500 East Duarte Road, Duarte, CA 91010, USA.

Funding

Transgenic Mouse FacilityP30CA033572 · NCI · CITY OF HOPE/BECKMAN RESEARCH INSTITUTE · PI John Charles Williams · 1985 to 2026
$86.3M
Function Analysis of FEN-1 Nuclease in Genome StabilityR01CA073764 · NCI · CITY OF HOPE/BECKMAN RESEARCH INSTITUTE · PI BINGHUI SHEN · 2002 to 2026
$7.9M
Functional Analysis of Structure Specific Nucleases in Genome Stability and CancersR50CA211397 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI ZHENG, LI · 2016 to 2025
$3.3M
NCI NIH HHS P30 CA033572NCI NIH HHS R01 CA073764NCI NIH HHS R50 CA211397
6 · The paper itself

Abstract

Precise regulation of enzyme recruitment during Okazaki fragment maturation (OFM) is essential for faithful and efficient lagging-strand DNA synthesis. Emerging evidence suggests that PARP1 contributes to OFM yet its specific functions remain unclear. Here, we define context-dependent functions of PARP1 during OFM. Under physiological conditions, PARP1 co-localizes with PCNA in early S phase and restrains Pol δ-PCNA-mediated strand-displacement DNA synthesis, thereby preventing the formation of long 5' flaps, which is refractory to FEN1 cleavage. On the other hand, in LIG1-deficient cells, in which DNA nicks and unexpectedly long 5' flaps accumulate, PARP1 promotes the recruitment of LIG3 to catalyze OF ligation and DNA2 to facilitate long 5' flap processing. Collectively, our findings uncover previously unrecognized roles of PARP1 in regulating 5' flap dynamics to ensure efficient OFM and cell viability.

Identifiers

PMID42094445
PMCPMC13142317

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.