Evidence map›Paper›PMID 42094444›Full record

ArticlebioRxiv : the preprint server for biology2026

Accurate

Lars Gabriel, Tomáš Brůna, Asees Kaur, Anish Krishnan, Felix Ortmann, Asaf Salamov, Samuel Talbot, Felix Becker, Richard Krieg, Christopher W Wheat and 3 more

Abstract readPreprint
PubMed Full text at PMC Publisher
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Lars GabrielInstitute of Mathematics and Computer Science, University of Greifswald, Walther-Rathenau-Str. 47, 17489 Greifswald, MV, Germany.ORCID 0000-0003-0264-016X
Tomáš BrůnaDOE Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, 94720, California, USA.ORCID 0000-0001-9811-5532
Asees KaurUniversity of California Merced, Merced, CA 95343, USA.ORCID 0009-0003-1734-6585
Anish KrishnanDepartment of Plant and Microbial Biology, University of California Berkeley, Berkeley, CA 94720, USA.ORCID 0009-0001-9236-0956
Felix OrtmannInstitute of Mathematics and Computer Science, University of Greifswald, Walther-Rathenau-Str. 47, 17489 Greifswald, MV, Germany.
Asaf SalamovDOE Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, 94720, California, USA.ORCID 0000-0002-3349-8138
Samuel TalbotCenter for Quantitative Life Sciences, Oregon State University, OR 97331, Oregon, USA.ORCID 0000-0001-7480-1343
Felix BeckerInstitute of Mathematics and Computer Science, University of Greifswald, Walther-Rathenau-Str. 47, 17489 Greifswald, MV, Germany.ORCID 0000-0001-6831-8523
Richard KriegInstitute of Mathematics and Computer Science, University of Greifswald, Walther-Rathenau-Str. 47, 17489 Greifswald, MV, Germany.
Christopher W WheatDepartment of Zoology, Stockholm University, Svante Arrhenius väg 18b, SE-106 91, Stockholm, Sweden.ORCID 0000-0003-1863-2340
Igor V GrigorievDOE Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, 94720, California, USA.ORCID 0000-0002-3136-8903
Mario StankeInstitute of Mathematics and Computer Science, University of Greifswald, Walther-Rathenau-Str. 47, 17489 Greifswald, MV, Germany.ORCID 0000-0001-8696-0384
Katharina J HoffInstitute of Mathematics and Computer Science, University of Greifswald, Walther-Rathenau-Str. 47, 17489 Greifswald, MV, Germany.ORCID 0000-0002-7333-8390

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Eukaryotic genome annotation is currently bottlenecked by limitations in the generality, scalability and accuracy of computational methods. Deep learning approaches have recently achieved large improvements in Availability and implementation: https://github.com/Gaius-Augustus/Tiberius.

Indexed as

deep learningeukaryotesgene predictiongenome annotationhidden Markov model

Identifiers

PMID42094444
PMCPMC13142403

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.