Evidence map›Paper›PMID 42093264›Full record

ArticleJournal of computational chemistry2026

CRISP: Enhancing ASE Workflows With Advanced Molecular Simulation Post-Processing.

Indranil Saha, Daniel Willimetz, Lukáš Grajciar

Abstract read
In one paragraph

Article in Journal of computational chemistry, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Indranil SahaDepartment of Physical and Macromolecular Chemistry, Faculty of Science, Charles University, Prague, Czech Republic.ORCID https://orcid.org/0009-0005-6111-3599
Daniel WillimetzDepartment of Physical and Macromolecular Chemistry, Faculty of Science, Charles University, Prague, Czech Republic.
Lukáš GrajciarDepartment of Physical and Macromolecular Chemistry, Faculty of Science, Charles University, Prague, Czech Republic.ORCID https://orcid.org/0000-0001-9464-7769

Funding

Charles University Centre of Advanced Materials (CUCAM) (OP VVV Excellent Research Teams) CZ.02.1.01/0.0/0.0/15_003/0000417Czech Science Foundation 23-07616SMinistry of Education, Youth and Sports of the Czech Republic through the e-INFRA CZ 90254
6 · The paper itself

Abstract

Molecular simulations are invaluable for analysing molecular systems, but existing post-processing tools are often limited by a lack of customization, interactivity, and efficiency with large datasets. To address this, we developed CRISP (Comprehensive Repository for Insightful Simulation Post-Processing), an open-source Python toolkit designed to enhance workflows within the Atomic Simulation Environment (ASE). CRISP provides a versatile platform for detailed analysis and visualization, featuring a customizable and modular design, various static analysis methods, interactive 3D visualizations, and parallel processing capabilities optimized for high-performance computing. We demonstrate its effectiveness through case studies, including the analysis of statistical convergence in zeolite simulations, subsampling large datasets for machine learning, and analysing the dynamic stability of atomic clusters. CRISP effectively bridges the gap between raw simulation data and actionable insights, offering an efficient solution for researchers and saving significant time in code development.

Indexed as

data analysismaterials sciencemolecular simulationpython

Identifiers

PMID42093264
PMCPMC13150413

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.