Evidence map›Paper›PMID 42090557›Full record

ArticlePlant physiology2026

Pre-mRNA splicing regulates cellular dedifferentiation via lipid metabolism in a cytokinin-dependent manner in Arabidopsis.

Ami Takeuchi, Toshiki Ishikawa, Toshihiro Arae, Junichi Togami, Kenji Nagamiya, Koji Koizumi, Takuyuki Ikeda, Shingo Nagawa, Iwai Ohbayashi, Munetaka Sugiyama and 1 more

Abstract read
In one paragraph

Article in Plant physiology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Ami TakeuchiGraduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba 277-8562, Japan.ORCID 0009-0002-1135-1458
Toshiki IshikawaGraduate School of Science and Engineering, Saitama University, Saitama, Saitama 338-8570, Japan.ORCID 0000-0001-8083-6542
Toshihiro AraeGraduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba 277-8562, Japan.ORCID 0000-0001-7860-7513
Junichi TogamiGraduate School of Science, The University of Tokyo, Tokyo 113-0033, Japan.ORCID 0009-0001-1279-6005
Kenji NagamiyaGraduate School of Science, The University of Tokyo, Tokyo 113-0033, Japan.
Koji KoizumiGraduate School of Science, The University of Tokyo, Tokyo 113-0033, Japan.ORCID 0000-0001-8753-8708
Takuyuki IkedaGraduate School of Science, The University of Tokyo, Tokyo 113-0033, Japan.ORCID 0000-0002-1393-1280
Shingo NagawaGraduate School of Science, The University of Tokyo, Tokyo 113-0033, Japan.ORCID 0009-0009-4812-4348
Iwai OhbayashiGraduate School of Science, The University of Tokyo, Tokyo 113-0033, Japan.ORCID 0000-0002-7098-0169
Munetaka SugiyamaGraduate School of Science, The University of Tokyo, Tokyo 113-0033, Japan.ORCID 0000-0002-7050-8964
Misato OhtaniGraduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba 277-8562, Japan.ORCID 0000-0001-5429-3310

Funding

Canon FoundationJSPS JP20H05405JSPS JP21H05652JSPS JP23H04191JSPS RFTF00L01605JSPS RFTF97L00601KAKENHI 22370015KAKENHI JP20K21415KAKENHI JP23KJ0515KAKENHI JP25K22340KAKENHI JPMJAP2306Naito FoundationSumitomo Foundation 141267Toray Science Foundation 19-6002
6 · The paper itself

Abstract

Plant cells exhibit high plasticity for proliferation and differentiation, and pre-mRNA splicing makes an important contribution to this plasticity. Here, we show that the gene responsible for root redifferentiation defective4-1 (rrd4-1), a temperature-sensitive Arabidopsis thaliana mutant with defects in adventitious rooting and callus formation from hypocotyls, encodes a homolog of yeast Ntr1, which is involved in pre-mRNA splicing. Defective callus formation in rrd4-1 at the restrictive temperature of 28 °C depended on the presence of kinetin (a synthetic cytokinin) in the callus-inducing medium. RNA-seq analysis revealed that genes involved in secondary cell wall biogenesis were upregulated, whereas those involved in cell cycle progression were downregulated, in a cytokinin-dependent manner in rrd4-1 at 28 °C. Moreover, kinetin and the rrd4-1 mutation had broad effects on alternative splicing, particularly on lipid metabolism genes such as PTPLA, SPHK2, and ATNCER1. Consistent with this result, levels of very-long-chain fatty acid (VLCFA)-type sphingolipids were reduced in rrd4-1, and kinetin affected their contents during callus induction. Kinetin enhanced the inhibitory effect of the lipid synthesis inhibitor cerulenin on callus formation, and rrd4-1 was hypersensitive to cerulenin. Together, our data suggest that pre-mRNA splicing regulates cytokinin-mediated cellular dedifferentiation through the regulation of lipid metabolism gene splicing.

Indexed as

ArabidopsisCell DedifferentiationCytokininsLipid MetabolismRNA PrecursorsRNA SplicingArabidopsis ProteinsGene Expression Regulation, PlantKinetinMutationArabidopsis ProteinsCytokininsKinetinRNA Precursors

Identifiers

PMID42090557
PMCPMC13222029

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.