Evidence map›Paper›PMID 42089940›Full record

ArticleJournal of molecular modeling2026

Layer resolved H-bond cooperativity in cluster model of boric acid: a combined IR, Raman, NCI, and QTAIM study.

Ferhat Kathu Noor, Mohamed Naseer Ali Mohamed, Gopalakrishnan Neelamegan, Mohamed Sameer Yousuff, Venu Kannappan

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Article in Journal of molecular modeling, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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5 authors.

Ferhat Kathu NoorDepartment of Physics, The New College, University of Madras, Chennai, 600014, India.
Mohamed Naseer Ali MohamedDepartment of Physics, The New College, University of Madras, Chennai, 600014, India. mmdnaseer@gmail.com.
Gopalakrishnan NeelameganDepartment of Physics, The New College, University of Madras, Chennai, 600014, India.
Mohamed Sameer YousuffDepartment of Physics, The New College, University of Madras, Chennai, 600014, India.
Venu KannappanDepartment of Chemistry, Presidency College, Chennai, 600005, India.

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6 · The paper itself

Abstract

contextBoric acid (BA) is a classical H-bonded molecular solid in which intricate cooperative H-bonded interactions govern structural stability, electronic structures and vibrational properties. Despite extensive studies, a clear molecular-level understanding of how H-bond cooperativity influences vibrational stratification and interlayer interactions is limited. Vibrational analyses from this study reveal clear stratification of O-H stretching modes due to distinct H-bonding environments, with strongly cooperative inner-ring H-bonds providing a pronounced red-shifted frequency (~ 2932 cm⁻

methodsInitial geometries were derived from experimentally validated crystal structures and modelled as finite hexameric clusters representing boric-acid rosette motifs. Geometry optimizations were carried out using the Perdew-Burke-Ernzerhof (PBE) functional with a plane-wave basis set and ultrasoft pseudopotentials as implemented in the Quantum ESPRESSO package. Subsequent single-point calculations were performed using the M05-2X/6-31G(d,p) basis set using Gaussian 09 to obtain accurate wave functions for non-covalent interaction analysis. NCI analyses were conducted using the Multiwfn program, while QTAIM analysis was used to characterize bond critical points and interaction strengths. Vibrational frequencies (IR and Raman) were computed at the same level of theory to probe H-bonding environments. Molecular visualization was carried out using VMD software.

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Boric acidDFTH-bond cooperativityNon-covalent interactions (NCI)QTAIM

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