Evidence map›Paper›PMID 42087718›Full record

ArticleThe journal of physical chemistry. A2026

From Local Atomic Structure to X-ray Spectra: Absorber-Centric Machine-Learning Encoding.

Thomas James Pope, Bowen Li, Hendrik Junkawitsch, Annika Bande, Thomas James Penfold

Abstract read
In one paragraph

Article in The journal of physical chemistry. A, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Thomas James PopeChemistry - School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne NE1 7RU, U.K.ORCID 0000-0001-7552-9812
Bowen LiResearch Software Engineer Group, Newcastle University, Newcastle upon Tyne NE1 7RU, U.K.
Hendrik JunkawitschHelmholtz-Zentrum Berlin für Materialien und Energie GmbH, Theory of Electron Dynamics and Spectroscopy, Hahn-Meitner-Platz 1, Berlin 14109, Germany.ORCID 0009-0007-8276-3309
Annika BandeHelmholtz-Zentrum Berlin für Materialien und Energie GmbH, Theory of Electron Dynamics and Spectroscopy, Hahn-Meitner-Platz 1, Berlin 14109, Germany.ORCID 0000-0003-3827-9169
Thomas James PenfoldChemistry - School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne NE1 7RU, U.K.ORCID 0000-0003-4490-5672

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

X-ray spectroscopy provides sensitive, element-specific insight into local geometric and electronic structures, but predictive first-principles simulations can be computationally expensive for large and chemically diverse molecular systems. Recent machine-learning approaches have shown promise in accelerating structure-to-spectrum prediction; however, most directly regress discretized spectral intensities and rely on hand-crafted geometric descriptors centered on the absorbing atom. Herein, we introduce a machine learning framework that encodes a detailed, environment-aware representation of the nuclear structure beyond the absorbing site. The model combines these descriptors with a physically motivated, multiscale Gaussian spectral basis whose coefficients are obtained via ridge projection, enforcing smoothness and spectral consistency. To further enhance robustness across chemical and conformational diversity, we employ a multiscale structural similarity loss that couples geometric and spectral resolution. This integrated approach yields accurate and transferable predictions across a wide range of molecular geometries and chemical environments while maintaining physical interpretability. The proposed framework establishes a physically structured and scalable route to machine-learned X-ray spectroscopy.

Identifiers

PMID42087718
PMCPMC13200179

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.