Evidence map›Paper›PMID 42086857›Full record

ArticleThe EMBO journal2026

Phosphorylation tunes p62 condensates to drive autophagic degradation of ubiquitinated proteins.

Satoko Komatsu-Hirota, Keisuke Tabata, Yu-Shin Sou, Soichiro Kakuta, Jun-Ichi Sakamaki, Hikaru Tsuchiya, Jiachen Li, Hiroyuki Kumeta, Yuji Sakai, Yuko Fujioka and 9 more

Abstract read
In one paragraph

Article in The EMBO journal, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Satoko Komatsu-HirotaDepartment of Physiology, Juntendo University Graduate School of Medicine, Tokyo, Japan.
Keisuke TabataDepartment of Physiology, Juntendo University Graduate School of Medicine, Tokyo, Japan.
Yu-Shin SouDepartment of Cell Biology and Neuroscience, Juntendo University Graduate School of Medicine, Tokyo, Japan.
Soichiro KakutaLaboratory of Morphology and Image Analysis, Biomedical Research Core Facilities, Juntendo University Graduate School of Medicine, Tokyo, Japan.ORCID http://orcid.org/0000-0001-9434-4944
Jun-Ichi SakamakiDepartment of Physiology, Juntendo University Graduate School of Medicine, Tokyo, Japan.ORCID http://orcid.org/0000-0003-3361-6314
Hikaru TsuchiyaDepartment of Physiology, Juntendo University Graduate School of Medicine, Tokyo, Japan.ORCID http://orcid.org/0000-0002-2797-6711
Jiachen LiDepartment of Physiology, Juntendo University Graduate School of Medicine, Tokyo, Japan.ORCID http://orcid.org/0009-0005-4666-6486
Hiroyuki KumetaFrontier Research Center for Advanced Material and Life Science, Graduate School of Life Science and Faculty of Advanced Life Science, Hokkaido University, Sapporo, Japan.ORCID http://orcid.org/0000-0003-3713-2122
Yuji SakaiGraduate School of Nanobioscience, Yokohama City University, Yokohama, Japan.
Yuko FujiokaInstitute for Genetic Medicine, Hokkaido University, Sapporo, Japan.ORCID http://orcid.org/0000-0002-6905-0669
Daisuke NoshiroInstitute for Genetic Medicine, Hokkaido University, Sapporo, Japan.ORCID http://orcid.org/0000-0001-7024-2054
Shunsuke F ShimobayashiDepartment of Life Science Frontiers Center for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto, Japan.
Tomo KurimuraDepartment of Life Science Frontiers Center for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto, Japan.ORCID http://orcid.org/0009-0005-7858-6413
Takashi TaniguchiGraduate School of Engineering, Department of Chemical Engineering, Kyoto University, Kyoto, Japan.ORCID http://orcid.org/0000-0003-0017-7669
Manabu AbeDepartment of Animal Model Development, Brain Research Institute, Niigata University, Niigata, Japan.
Masato KoikeDepartment of Cell Biology and Neuroscience, Juntendo University Graduate School of Medicine, Tokyo, Japan.ORCID http://orcid.org/0000-0002-3174-5684
Hideaki MorishitaDepartment of Molecular Cell Biology, Graduate School of Medical Sciences, Kyushu University, Fukuoka, Japan.
Nobuo N NodaInstitute for Genetic Medicine, Hokkaido University, Sapporo, Japan.ORCID http://orcid.org/0000-0002-6940-8069
Masaaki KomatsuDepartment of Physiology, Juntendo University Graduate School of Medicine, Tokyo, Japan. mkomatsu@juntendo.ac.jp.ORCID http://orcid.org/0000-0001-7672-7722

Funding

Japan Agency for Medical Research and Development (AMED) 21gm6410019h0001Japan Agency for Medical Research and Development (AMED) JP22gm1410004h0003MEXT | Japan Society for the Promotion of Science (JSPS) JP22H04926MEXT | Japan Society for the Promotion of Science (JSPS) JP23H04923MEXT | Japan Society for the Promotion of Science (JSPS) JP23K06065MEXT | Japan Society for the Promotion of Science (JSPS) JP23K20044MEXT | Japan Society for the Promotion of Science (JSPS) JP23K27134MEXT | Japan Society for the Promotion of Science (JSPS) JP24H00060MEXT | Japan Society for the Promotion of Science (JSPS) JP24H01901MEXT | Japan Society for the Promotion of Science (JSPS) JP25H00315MEXT | Japan Society for the Promotion of Science (JSPS) JP25H00966MEXT | Japan Society for the Promotion of Science (JSPS) JP25H0132MEXT | Japan Society for the Promotion of Science (JSPS) JP25H01320MEXT | Japan Society for the Promotion of Science (JSPS) JP25H01323MEXT | Japan Society for the Promotion of Science (JSPS) JP25H01328MEXT | Japan Society for the Promotion of Science (JSPS) JP25H01419MEXT | Japan Society for the Promotion of Science (JSPS) JP25K09567MEXT | JST | Core Research for Evolutional Science and Technology (CREST) JPMJCR20E3
6 · The paper itself

Abstract

p62/SQSTM1 self-assembles with polyubiquitin into liquid-like condensates ("p62 bodies") that function as stress-signaling hubs and selective autophagy cargo. We show that TBK1-dependent phosphorylation at Ser403 acts as a threshold-dependent modulator of a condensate's physical properties and promotes their rapid autophagic clearance. Phosphorylation within p62 bodies drives a transition from large, fluid droplets to compact, gel-like condensates that efficiently capture LC3-positive isolation membranes and accelerate the autophagic removal of ubiquitinated proteins. PP2A holoenzymes containing PPP2R5A/B/E, recruited via a KEAP1 bridge, counteract TBK1 by dephosphorylating Ser403. Homozygous p62S403E/S403E knock-in embryonic stem cells differentiate into post-mitotic neurons enriched in miniaturized, gel-like p62 bodies. Consistently, phosphorylation-mimetic knock-in mice show similar remodeling of p62 condensates in vivo, demonstrating that this phosphorylation-driven mechanism maintains proteostasis across scales. We propose that Ser403 phosphorylation functions as a molecular switch that couples the material state of p62 condensates to their stability and serves as a central control point for p62-mediated protein degradation.

Indexed as

AutophagySequestosome-1 ProteinUbiquitinated ProteinsAnimalsHumansMicePhosphorylationProtein Serine-Threonine KinasesProteolysisProtein Serine-Threonine KinasesSequestosome-1 ProteinSQSTM1 protein, humanSqstm1 protein, mouseUbiquitinated Proteins

Identifiers

PMID42086857
PMCPMC13270050

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.