Evidence map›Paper›PMID 42085563›Full record

ArticleGenetics2026

Comparative genomic analysis and epigenetic profiling of the Drosophila melanogaster B chromosome.

Ana B S M Ferretti, Diogo Milani, Emiliano Martí, Rhavenna T Alves-Gomes, Maria D Vibranovski, Stacey L Hanlon, Diogo C Cabral-de-Mello

Abstract readComparative Study
In one paragraph

Article in Genetics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. The enigma of the B chromosome-specific behaviour.Frontiers in plant science · 2026
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Ana B S M FerrettiDepartamento de Biologia Geral e Aplicada, UNESP-Univ Estadual Paulista, Instituto de Biociências/IB, Rio Claro, São Paulo 13606-900, Brazil.ORCID 0000-0001-8113-5107
Diogo MilaniDepartamento de Biologia Geral e Aplicada, UNESP-Univ Estadual Paulista, Instituto de Biociências/IB, Rio Claro, São Paulo 13606-900, Brazil.ORCID 0000-0002-8886-5767
Emiliano MartíDepartment of Biology, University of Rochester, Rochester, NY 14627, United States.ORCID 0000-0002-4186-5954
Rhavenna T Alves-GomesDepartamento de Biologia Geral e Aplicada, UNESP-Univ Estadual Paulista, Instituto de Biociências/IB, Rio Claro, São Paulo 13606-900, Brazil.ORCID 0000-0002-3888-6244
Maria D VibranovskiSchool of Mathematical and Natural Sciences, New College of Interdisciplinary Arts and Sciences, Arizona State University, Glendale, AZ 85306, United States.ORCID 0000-0001-8313-9726
Stacey L HanlonDepartment of Molecular and Cell Biology, Genetics and Genomics, University of Connecticut, Storrs, CT 06269, United States.ORCID 0000-0002-1963-8616
Diogo C Cabral-de-MelloDepartamento de Biologia Geral e Aplicada, UNESP-Univ Estadual Paulista, Instituto de Biociências/IB, Rio Claro, São Paulo 13606-900, Brazil.ORCID 0000-0002-4721-2655

Funding

Arizona State University in the laboratoryConselho Nacional de Desenvolvimento Científico e Tecnológico 302252/2025-8Conselho Nacional de Desenvolvimento Científico e Tecnológico 309979/2023-4Coordenação de Aperfeiçoamento de Pessoal de Nível Superior-Brazil financial code 001Fundação de Amparo a Pesquisa do Estado de São Paulo 2015/16661-1Fundação de Amparo a Pesquisa do Estado de São Paulo 2020/06188-5Fundação de Amparo a Pesquisa do Estado de São Paulo 2023/02581-2Fundação de Amparo a Pesquisa do Estado de São Paulo 2023/14607Stowers Institute in the lab of R. Scott Hawley
6 · The paper itself

Abstract

Supernumerary B chromosomes have been identified in hundreds of species across many different taxa, each with their own evolutionary history, unique sequence composition, and epigenetic profile. In this study, we generated a detailed repetitive sequence and epigenetic landscape of the B chromosomes in Drosophila melanogaster. By comparing the repetitive DNA content of stocks with (+B) and without (0B) B chromosomes, we found 9 satellite DNA (satDNA) sequences that were enriched in the +B genome, 3 of which were cytogenetically confirmed to be on the B chromosomes. Our satDNA analysis also led to the discovery of 3 novel satDNA repeats that are not on the B chromosomes and have not been described previously (Sat-307, Sat-597, and Sat-228). Analysis of transposable elements (TEs) revealed that although TEs comprise similar proportions of the 0B and +B genomes, the centromeric transposon G2/Jockey is modestly enriched in the +B genome, consistent with the high number of centromeres present in the +B genome. We also immunostained both male somatic and germline tissues to gain insight into the epigenetic state of the B chromosomes and found the presence of heterochromatin-associated histone modifications (H3K9me1, H3K9me2), a lack of acetylation (H4K5ac), and the absence of RNA polymerase II in the B chromosome nuclear territory, suggesting the B chromosomes have a reduced level of transcription. Together, our work further defines the genetic composition of the D. melanogaster B chromosome and establishes its epigenetic profile, which will provide a foundation for future work investigating changes to repetitive DNA over time and how a transcriptionally repressed chromosome influences chromatin maintenance in the genome.

Indexed as

Chromosomes, InsectDrosophila melanogasterEpigenesis, GeneticAnimalsCentromereDNA, SatelliteDNA Transposable ElementsFemaleGenome, InsectGenomicsHeterochromatinHistonesMaleRepetitive Sequences, Nucleic AcidDNA, SatelliteDNA Transposable ElementsHeterochromatinHistonesB chromosomecytogeneticsepigenetic silencingkaryotype evolutionrepetitive DNAsatellite DNAstransposable elements

Identifiers

PMID42085563
PMCPMC13439713

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.