Evidence map›Paper›PMID 42083916›Full record

ArticleActa crystallographica. Section D, Structural biology2026

Structural insights into urocanate reductase using room-temperature X-ray crystallography.

Swati Aggarwal, Nitisha Gurav, Esko Oksanen, Karin Lindkvist-Petersson, Raminta Venskutonytė

Abstract read
In one paragraph

Article in Acta crystallographica. Section D, Structural biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Swati AggarwalEuropean Spallation Source ERIC (ESS), 221 00 Lund, Sweden.
Nitisha GuravLINXS - Institute of Advanced Neutron and X-ray Science, Lund, Sweden.
Esko OksanenEuropean Spallation Source ERIC (ESS), 221 00 Lund, Sweden.ORCID 0000-0002-1841-4813
Karin Lindkvist-PeterssonLINXS - Institute of Advanced Neutron and X-ray Science, Lund, Sweden.
Raminta VenskutonytėLINXS - Institute of Advanced Neutron and X-ray Science, Lund, Sweden.

Funding

Diabetesfonden DIA2020-500Diabetesfonden DIA2022-706H2020 Marie Slodowska-Curie Actions 101081419Hanseatic Life Science Research Infrastructure Consortium PP57Vetenskapsrådet 2020-02028Vetenskapsrådet 2024-02673
6 · The paper itself

Abstract

Urocanate reductase (UrdA) is a bacterial enzyme that converts urocanic acid to imidazole propionate. Its catalytic residue Arg411 undergoes a large conformational change in the substrate-bound versus product-bound states. In contrast to previously studied cryo-conditions, the room-temperature X-ray data of UrdA presented here show that the occupancy distribution of Arg411 is affected by crystal cryocooling. We further provide evidence that a phosphate ion stabilizes the substrate complex and can bias the conformation of Arg411. Both room-temperature and cryogenic X-ray datasets were essential to elucidate the dynamic nature of the UrdA active site, highlighting the importance of collecting data at both temperatures, as each may reveal distinct conformational states.

Indexed as

Bacterial ProteinsOxidoreductasesCatalytic DomainCrystallography, X-RayModels, MolecularProtein ConformationTemperatureBacterial ProteinsOxidoreductasesactive-site anion interactionsroom-temperature crystallographyurocanate reductase

Identifiers

PMID42083916
PMCPMC13224921

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.