Evidence map›Paper›PMID 42082832›Full record

Articlenpj antimicrobials and resistance2026

Molecular mechanism of transition-state inhibitors of bacterial antibiotic efflux pumps.

Clara Börnsen, Reinke T Müller, Anais Vieira Da Cruz, Juan-Carlos Jiménez-Castellanos, Virginie Meurillon, Lorenz Brandstätter, Eszter V Lodinsky, Mohd Athar, Attilio V Vargiu, Ruben C Hartkoorn and 3 more

Abstract read
In one paragraph

Article in npj antimicrobials and resistance, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Clara Börnsen *Buchmann Institute for Molecular Life Sciences and Institute for Biophysics, Goethe University Frankfurt, Frankfurt am Main, Germany.
Reinke T Müller *Cluster of Excellence SubCellular Architecture of Life (SCALE), Goethe University, Frankfurt, Frankfurt am Main, Germany. reinkemueller@gmx.de.
Anais Vieira Da CruzUniv. Lille, Inserm, Institut Pasteur de Lille, U1177 - Drugs and Molecules for Living Systems, F-59000, Lille, France.
Juan-Carlos Jiménez-CastellanosUniv. Lille, CNRS, Inserm, CHU Lille, Institut Pasteur de Lille, U1019 - UMR 9017 - CIIL - Center for Infection and Immunity of Lille, F-59000, Lille, France.
Virginie MeurillonUniv. Lille, Inserm, Institut Pasteur de Lille, U1177 - Drugs and Molecules for Living Systems, F-59000, Lille, France.
Lorenz BrandstätterCluster of Excellence SubCellular Architecture of Life (SCALE), Goethe University, Frankfurt, Frankfurt am Main, Germany.
Eszter V LodinskyCluster of Excellence SubCellular Architecture of Life (SCALE), Goethe University, Frankfurt, Frankfurt am Main, Germany.
Mohd AtharDepartment of Physics, University of Cagliari, Cagliari, Italy.
Attilio V VargiuDepartment of Physics, University of Cagliari, Cagliari, Italy.
Ruben C HartkoornUniv. Lille, CNRS, Inserm, CHU Lille, Institut Pasteur de Lille, U1019 - UMR 9017 - CIIL - Center for Infection and Immunity of Lille, F-59000, Lille, France. ruben.hartkoorn@inserm.fr.
Marion FlipoUniv. Lille, Inserm, Institut Pasteur de Lille, U1177 - Drugs and Molecules for Living Systems, F-59000, Lille, France. marion.flipo@univ-lille.fr.
Achilleas S FrangakisBuchmann Institute for Molecular Life Sciences and Institute for Biophysics, Goethe University Frankfurt, Frankfurt am Main, Germany. achilleas.frangakis@biophysik.org.
Klaas M PosCluster of Excellence SubCellular Architecture of Life (SCALE), Goethe University, Frankfurt, Frankfurt am Main, Germany. pos@em.uni-frankfurt.de.

Funding

Optimization of efflux avoidance and inhibition for antibiotic developmentR01AI136799 · NIAID · UNIVERSITY OF OKLAHOMA · PI GNANAKARAN, SANDRASEGARAM, RUGGERONE, PAOLO · 2018 to 2022
$5.7M
Bundesministerium für Bildung und Forschung (BMBF, Germany) BMBF16GW0236K/01KI2123Deutsche Forschungsgemeinschaft SFB1507/P03Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany´s Excellence Strategy EXC-3094 - 533751785eINS Ecosystem of Innovation for Next Generation Sardinia - CUP J85B17000360007 - Concession Decree No. 1056 adopted on June 23, 2022, by the Italian Ministry of University and Research ECS0000038Equipex Imaginex BioMed Feder 12001407 (D-AL)Fondation pour la Recherche Médicale FRM: ECO202206015500- L'Agence Nationale de la Recherche (ANR, France) ANR-19-AMRB-0007L'Agence Nationale de la Recherche (ANR, France) ANR-23-CE18-0040NIAID/NIH R01AI136799One Health Basic and Translational Research Actions addressing Unmet Needs on Emerging Infectious Diseases (INF-ACT) foundation by the Italian Ministry of University and Research, PNRR, mission 4, component 2, investment 1.3 PE00000007 (University of Cagliari)
6 · The paper itself

Abstract

In many Gram-negative bacteria such as Escherichia coli and Klebsiella pneumoniae, the AcrAB-TolC efflux pump is central to multidrug resistance. We report the development of BDM91531, a nanomolar pyridylpiperazine inhibitor that potentiates the activity of several antibiotics. Structural analyses by X-ray crystallography and cryo-EM revealed that the divalent cationic BDM91531 binds AcrB through electrostatic interactions with a central role for residues D408 and E947, trapping protomers in an O to L transitional state and blocking the conformational cycling of the trimer. Differential scanning fluorimetry and susceptibility tests confirmed this inhibitory mechanism. Negative charges at the cytoplasmic rim are essential for inhibitor uptake as electrostatic attraction from rim carboxylates, including E947 and D951, facilitates entry. Loss of D951 abolished inhibitor sensitivity, whereas introducing alternative negative charges restored activity. These findings establish BDM91531 as a potent AcrB efflux pump inhibitor and highlight structural determinants for inhibitor access and binding.

Identifiers

PMID42082832
PMCPMC13139501

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.