Evidence map›Paper›PMID 42080562›Full record

SynthesisJournal of proteome research2026

An AI-Ready Phosphorylation Meta-Analysis for

Ellen L Boswell, Kerry A Ramsbottom, Jun Fan, Yasset Perez-Riverol, Emily H Bowler-Barnett, Zhi Sun, Shahram Mesdaghi, Daniel J Rigden, Maria J Martin, Eric W Deutsch and 2 more

Abstract readMeta-Analysis
In one paragraph

Synthesis in Journal of proteome research, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Ellen L BoswellInstitute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7BE, U.K.ORCID 0009-0003-3404-0211
Kerry A RamsbottomInstitute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7BE, U.K.ORCID 0000-0002-7432-9293
Jun FanEuropean Molecular Biology Laboratory, EMBL-European Bioinformatics Institute (EMBL-EBI), Hinxton, Cambridge CB10 1SD, U.K.
Yasset Perez-RiverolEuropean Molecular Biology Laboratory, EMBL-European Bioinformatics Institute (EMBL-EBI), Hinxton, Cambridge CB10 1SD, U.K.ORCID 0000-0001-6579-6941
Emily H Bowler-BarnettEuropean Molecular Biology Laboratory, EMBL-European Bioinformatics Institute (EMBL-EBI), Hinxton, Cambridge CB10 1SD, U.K.
Zhi SunInstitute for Systems Biology, Seattle, Washington 98109, United States.
Shahram MesdaghiInstitute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7BE, U.K.
Daniel J RigdenInstitute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7BE, U.K.ORCID 0000-0002-7565-8937
Maria J MartinEuropean Molecular Biology Laboratory, EMBL-European Bioinformatics Institute (EMBL-EBI), Hinxton, Cambridge CB10 1SD, U.K.
Eric W DeutschInstitute for Systems Biology, Seattle, Washington 98109, United States.ORCID 0000-0001-8732-0928
Juan Antonio VizcaínoEuropean Molecular Biology Laboratory, EMBL-European Bioinformatics Institute (EMBL-EBI), Hinxton, Cambridge CB10 1SD, U.K.ORCID 0000-0002-3905-4335
Andrew R JonesInstitute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7BE, U.K.ORCID 0000-0001-6118-9327

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We, the PTMeXchange Consortium, present a meta-analysis of eight high-quality data sets to map 56,694 phosphosites in brewer's yeast (

Indexed as

Artificial IntelligencePhosphoproteinsProteomicsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsPhosphorylationProtein Processing, Post-TranslationalThreoninePhosphoproteinsSaccharomyces cerevisiae ProteinsThreonineAI-ready datafalse localization ratephosphoproteomicsSaccharomyces cerevisiae

Identifiers

PMID42080562
PMCPMC13247961

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.