Evidence map›Paper›PMID 42079231›Full record

ArticlebioRxiv : the preprint server for biology2026

Emergence of D1.1 reassortant H5N1 avian influenza viruses in North America.

Alvin Crespo-Bellido, Nídia S Trovão, Wendy Puryear, Alexander Maksiaev, Jonathan E Pekar, Guy Baele, Simon Dellicour, Martha I Nelson

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Alvin Crespo-BellidoDivision of Intramural Research, National Library of Medicine, Bethesda, MD USA.ORCID 0000-0002-3462-9072
Nídia S TrovãoDepartment of Pathobiology, College of Veterinary Medicine, University of Illinois Urbana-Champaign, Urbana, IL, USA.ORCID 0000-0002-2106-1166
Wendy PuryearInfectious Disease and Global Health, Tufts University Cummings School of Veterinary Medicine, North Grafton, MA01536, USA.
Alexander MaksiaevDivision of Intramural Research, National Library of Medicine, Bethesda, MD USA.
Jonathan E PekarInstitute of Ecology and Evolution, University of Edinburgh, Edinburgh, UK.ORCID 0000-0003-0977-2886
Guy BaeleDepartment of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Leuven, Belgium.ORCID 0000-0002-1915-7732
Simon DellicourDepartment of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Leuven, Belgium.ORCID 0000-0001-9558-1052
Martha I NelsonDivision of Intramural Research, National Library of Medicine, Bethesda, MD USA.ORCID 0000-0003-4814-0179

Funding

NIAID Centers of Excellence for Influenza Research and Response: Universal Influenza Vaccine Research Activities75N93021C00014 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI GARCIA-SASTRE, ADOLFO · 2021 to 2025
$62.6M
NIH HHS 75N93021C00014
6 · The paper itself

Abstract

Since 2021, highly pathogenic avian influenza viruses (HPAIVs) belonging to H5N1 clade 2.3.4.4b have circulated widely in North American wild birds and repeatedly spilled over into mammals. In 2025, the first H5N1-associated deaths in humans were recorded in the Western hemisphere, raising questions about how the ongoing evolution of the virus in wild birds impacts spillover risk. Here, our analysis of 21,471 H5N1 genomes identified an evolutionary shift in mid-2024, driven by interhemispheric migration from Asia and reassortment with new antigens. The genotypes that dominated the early years of North America's H5N1 epizootic traced their ancestry back to Europe, but Asia was the source of new "D1.1" genotype viruses that (a) spread faster, (b) have higher reassortment potential, (c) a broader host range, (d) repeatedly spill over to bovines, and (e) cause severe disease in humans, including non-farm workers.

Indexed as

Bayesian phylodynamicsevolutiongenomic reassortmentH5N1highly pathogenic avian influenzainfluenza A virus

Identifiers

PMID42079231
PMCPMC13131777

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.