Evidence map›Paper›PMID 42071145›Full record

ReviewAdvances in experimental medicine and biology2026

FAIR Omics Data Management: Overview, Challenges, and Best Practices.

Francisco Pina-Martins, Gil Poiares-Oliveira, Jorge Oliveira, Catia Pesquita

Abstract readReview
PubMed Publisher
In one paragraph

Review in Advances in experimental medicine and biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Francisco Pina-MartinsComputational Biology and Population Genomics Group, cE3c-Center for Ecology, Evolution and Environmental Changes & CHANGE-Global Change and Sustainability Institute, Faculdade de Ciências, Universidade de Lisboa, Lisbon, Portugal. frmartins@ciencias.ulisboa.pt.
Gil Poiares-OliveiraINESC-ID, Instituto Superior Técnico, Universidade de Lisboa, Lisboa, Lisbon, Portugal.
Jorge OliveiraINESC-ID, Instituto Superior Técnico, Universidade de Lisboa, Lisboa, Lisbon, Portugal.
Catia PesquitaLASIGE, Faculdade de Ciências da Universidade de Lisboa, Lisboa, Portugal.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This chapter provides a comprehensive overview of FAIR principles applied to omics data management, addressing key challenges in handling large-scale, heterogeneous datasets while promoting reproducibility, collaboration, and open science practices. It covers essential strategies including Data Management Plans (DMPs), file organization, metadata standards, ontologies, repository selection, interoperability protocols, and security measures for privacy and ethics compliance. Best practices are outlined for achieving Findable, Accessible, Interoperable, and Reusable data, with recommendations for continuous improvement to support cross-omics integration and long-term data stewardship.

Indexed as

Computational BiologyData ManagementGenomicsComputer SecurityHumansMetadataMultiomicsAccessibleData managementFindableInteroperableReusable

Identifiers

PMID42071145

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.