Evidence map›Paper›PMID 42070976›Full record

ArticleFEBS letters2026

pH-mediated activation of the lysosomal arginine sensor SLC38A9.

Xuelang Mu, Ampon Sae Her, Tamir Gonen

Abstract read
In one paragraph

Article in FEBS letters, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Xuelang MuDepartment of Biological Chemistry, University of California, Los Angeles, CA, USA.ORCID https://orcid.org/0000-0003-2014-7360
Ampon Sae HerDepartment of Biological Chemistry, University of California, Los Angeles, CA, USA.
Tamir GonenDepartment of Biological Chemistry, University of California, Los Angeles, CA, USA.

Funding

TRD4: Design and Engineering of MicroED hardware for nanocrystallization and time resolved studiesP41GM136508 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SPENCE, JOHN CHARLES · 2020 to 2024
$7.6M
MEDIC-MicroED Imaging Center at UCLARM1GM158451 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Tamir Gonen, Brent Nannenga · 2025 to 2026
$2.7M
Structural Insights into Leucine Transport for mTORC1 ActivationF32CA278619 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SAE HER, AMPON · 2023 to 2025
$226k
Howard Hughes Medical InstituteNCI NIH HHS F32 CA278619NCI NIH HHS F32CA278619NIGMS NIH HHS P41 GM136508NIGMS NIH HHS RM1 GM158451NIH HHS P41GM136508NIH HHS RM1GM158451
6 · The paper itself

Abstract

Cells rely on metabolic control; the mechanistic target of rapamycin complex 1 (mTORC1) senses nutrient availability, particularly amino acids. Lysosomes maintain amino acid homeostasis through recycling. SLC38A9, a lysosomal amino acid transporter, functions as a critical sensor in the mTORC1 pathway. Here, we investigate how pH regulates SLC38A9 activity. We show that arginine uptake is pH-dependent, with His544 residue serving as the pH sensor. Mutating His544 abolishes pH dependence without impairing overall transport, indicating His544 influences transport through protonation/deprotonation, instead of involving in the substrate binding. We propose a working model for pH-induced activation, through comparing two determined SLC38A9 structures at different pH. These findings reveal how local ionic shifts regulate lysosomal transporters and fine-tune SLC38A9 function to control mTORC1 signaling.

Indexed as

Amino Acid Transport SystemsArginineLysosomesHumansHydrogen-Ion ConcentrationMechanistic Target of Rapamycin Complex 1Models, MolecularSignal TransductionTOR Serine-Threonine KinasesAmino Acid Transport SystemsArginineMechanistic Target of Rapamycin Complex 1SLC38A9 protein, humanTOR Serine-Threonine Kinasesamino acid transportmTOR complexpH‐regulationSLC familytransceptor

Identifiers

PMID42070976
PMCPMC13358448

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.