Evidence map›Paper›PMID 42069823›Full record

ArticleScientific data2026

Single-nucleus chromatin landscapes of cholestatic injury and repair in mice liver.

Hong Wu, Yongqing Yang, Yan Wu, Jiangshan Xu, Pengcheng Guo, Shiping Liu, Yong Hou, Shijie Hao

Abstract read
In one paragraph

Article in Scientific data, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Hong WuCollege of Life Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China.
Yongqing YangCollege of Life Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China.
Yan WuBGI Research, Hangzhou, 310030, China.
Jiangshan XuBGI Research, Hangzhou, 310030, China.
Pengcheng GuoState Key Laboratory of Genome and Multi-omics Technologies, BGI Research, Hangzhou, 310030, China.
Shiping LiuState Key Laboratory of Genome and Multi-omics Technologies, BGI Research, Hangzhou, 310030, China.
Yong HouBGI Research, Shenzhen, 518083, China.
Shijie HaoState Key Laboratory of Genome and Multi-omics Technologies, BGI Research, Hangzhou, 310030, China. haoshijie@genomics.cn.

Funding

National Key Research and Development Program of China 2024YFF1206600
6 · The paper itself

Abstract

Liver progenitor-like cells (LPLCs) are essential for liver regeneration during some injury process, yet their epigenetic characters remain poorly understood. Using single-nucleus assay for transposase-accessible chromatin sequencing (snATAC-seq), we profiled chromatin accessibility in a mouse model of 3,5-diethoxycarbonyl-1,4-dihydrocollidin (DDC) diet-induced cholestasis at six time points: homeostasis (D0), injury (D8, D17), and repair (R2, R7, R21). We analyzed 75,452 high-quality nuclei, identifying 15 liver cell types, including LPLCs. Among 221,845 accessible chromatin regions, 192,079 showed differential accessibility. LPLCs exhibited enriched binding motifs for SWI/SNF (SMARCC1) and AP-1 (FOS, JUND and JUNB) complexes, highlighting their roles in transcriptional regulation. This study provides a comprehensive chromatin accessibility landscape of liver injury and regeneration, suggesting SWI/SNF and AP-1 as potential therapeutic targets.

Indexed as

CholestasisChromatinLiverLiver RegenerationAnimalsCell NucleusMicePyridinesTranscription Factor AP-13,5-diethoxycarbonyl-1,4-dihydrocollidineChromatinPyridinesTranscription Factor AP-1

Identifiers

PMID42069823
PMCPMC13342071

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.