Evidence map›Paper›PMID 42069685›Full record

ArticleGenome biology2026

Jointly-hic: joint decomposition of contact frequency maps captures salient features of genome architecture across tissues and development.

Thomas Reimonn, Vedat O Yilmaz, Hoang Tran, Garrett Ng, Derek Liu, Nezar Abdennur

Abstract read
In one paragraph

Article in Genome biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Thomas ReimonnDepartment of Genomics and Computational Biology, UMass Chan Medical School, Worcester, MA, USA.
Vedat O YilmazDepartment of Genomics and Computational Biology, UMass Chan Medical School, Worcester, MA, USA.
Hoang TranDepartment of Genomics and Computational Biology, UMass Chan Medical School, Worcester, MA, USA.
Garrett NgDepartment of Genomics and Computational Biology, UMass Chan Medical School, Worcester, MA, USA.
Derek LiuDepartment of Genomics and Computational Biology, UMass Chan Medical School, Worcester, MA, USA.
Nezar AbdennurDepartment of Genomics and Computational Biology, UMass Chan Medical School, Worcester, MA, USA. nezar.abdennur@umassmed.edu.

Funding

Center for 3D Structure and Physics of the GenomeUM1HG011536 · NHGRI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI DEKKER, JOB, MIRNY, LEONID A · 2020 to 2024
$11.8M
NIH HHS UM1 HG011536
6 · The paper itself

Abstract

Chromosome conformation capture methods, such as Hi-C, have been used to profile chromosome organization from a wide variety of biosamples and conditions; however, existing methods for analyzing such datasets have disadvantages for large-scale integrative studies of long-range interactions. To address this shortcoming, we introduce an analytical framework, jointly-hic, that computes harmonized projections across arbitrarily many contact frequency matrices, suitable for integrative studies of compartmentalization and long-range interactions. Our approach produces robust and directly comparable first and higher-order principal component scores that collectively capture biologically meaningful information beyond traditional A/B compartment scores.

Indexed as

GenomeGenomicsAnimalsChromosome MappingChromosomesHumansOrgan SpecificityPrincipal Component AnalysisChromosome organizationCompartmentalizationDevelopmentGenome architectureHeterochromatinHi-CLong-range interactions

Identifiers

PMID42069685
PMCPMC13285045

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.