Evidence map›Paper›PMID 42067806›Full record

ArticleBMC pregnancy and childbirth2026

Prenatal SNP-array chromosomal microarray analysis in 3,549 pregnancies: indication-specific yields and clinical implications.

Yilun Tao, Yuefeng Wei, Zerong Yao, Dong Han, Lihong Wang, Wenxia Song, Xiaoze Li

Abstract read
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Article in BMC pregnancy and childbirth, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

7 authors.

Yilun TaoMedical Genetic Center, Changzhi Maternal and Child Health Care Hospital, 38 Weiyuanmen Road, Changzhi, Shanxi, 046000, China. yltao21@163.com.
Yuefeng WeiMedical Genetic Center, Changzhi Maternal and Child Health Care Hospital, 38 Weiyuanmen Road, Changzhi, Shanxi, 046000, China.
Zerong YaoMedical Genetic Center, Changzhi Maternal and Child Health Care Hospital, 38 Weiyuanmen Road, Changzhi, Shanxi, 046000, China.
Dong HanMedical Genetic Center, Changzhi Maternal and Child Health Care Hospital, 38 Weiyuanmen Road, Changzhi, Shanxi, 046000, China.
Lihong WangDepartment of Pediatrics, Changzhi Maternal and Child Health Care Hospital, 38 Weiyuanmen Road, Changzhi, 046000, Shanxi, China.
Wenxia SongMedical Genetic Center, Changzhi Maternal and Child Health Care Hospital, 38 Weiyuanmen Road, Changzhi, Shanxi, 046000, China.
Xiaoze LiMedical Genetic Center, Changzhi Maternal and Child Health Care Hospital, 38 Weiyuanmen Road, Changzhi, Shanxi, 046000, China. Lixiaoze520@126.com.

Funding

Fundamental Research Program of Shanxi Province 202303021222374Scientific Research Foundation of the Health Commission of Shanxi Province 2021XM57
6 · The paper itself

Abstract

backgroundSNP-based chromosomal microarray analysis (CMA) is widely used in invasive prenatal diagnosis, yet real-world performance across contemporary referral pathways, especially in the NIPT era, remains incompletely characterized.

methodsWe retrospectively analyzed 3,549 prenatal invasive samples tested by SNP array, and evaluated diagnostic yield overall and by referral indication and ultrasound phenotype.

resultsIn total, we identified 398 pathogenic or likely pathogenic (P/LP) variants across 386 fetuses, resulting in an overall diagnostic yield of 10.9% (386/3,549). These findings comprised 223 aneuploidies and 175 pathogenic CNVs. In contrast, variants of uncertain significance (VOUS) were detected in 12.0% (426/3,549) of cases. Diagnostic yields were heavily stratified by indication: yields peaked in NIPT high-risk referrals (38.9%) and were intermediate in ultrasound-based cases (~ 11%), but dropped significantly in the advanced maternal age (AMA; 4.2%) and serum screening (~ 5-6%) groups. Conversely, VOUS rates remained remarkably stable across all referral categories. Sub-analysis of ultrasound abnormalities revealed that multisystem anomalies conferred the highest risk (27.3%), driven predominantly by aneuploidies; among soft markers, increased nuchal translucency (NT) emerged as the strongest predictor of chromosomal pathology.

conclusionsIn our cohort, SNP-array identified clinically actionable findings in 10.9% of cases. NIPT enriched diagnostic yields, particularly for aneuploidies, and NT thickness was strongly associated with pathogenic findings. These results support an indication-based approach to genomic testing, with NIPT as a triage tool for aneuploidy and CMA for high-risk populations, while improving VOUS counseling.

Indexed as

Chromosome DisordersMicroarray AnalysisPolymorphism, Single NucleotidePrenatal DiagnosisAdultAdvanced Maternal AgeAneuploidyDNA Copy Number VariationsFemaleHumansOligonucleotide Array Sequence AnalysisPregnancyRetrospective StudiesUltrasonography, PrenatalChromosomal microarray analysisCopy number variantsNon-invasive prenatal testingPrenatal diagnosisSNP Array

Identifiers

PMID42067806
PMCPMC13531756

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