Evidence map›Paper›PMID 42063997›Full record

ReviewBJR artificial intelligence2025

Integrating natural language processing into radiation oncology: a practical guide to transformer architecture and large language models.

Reza Khanmohammadi, Mohammad M Ghassemi, Kyle Verdecchia, Ahmed I Ghanem, Bing Luo, Indrin J Chetty, Hassan Bagher-Ebadian, Farzan Siddiqui, Mohamed Elshaikh, Benjamin Movsas and 1 more

Abstract readReview
In one paragraph

Review in BJR artificial intelligence, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Reza KhanmohammadiDepartment of Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, United States.ORCID https://orcid.org/0000-0002-6484-6983
Mohammad M GhassemiDepartment of Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, United States.ORCID https://orcid.org/0000-0001-5135-8588
Kyle VerdecchiaDepartment of Radiation Oncology, Henry Ford Health, Detroit, MI 48202, United States.
Ahmed I GhanemDepartment of Radiation Oncology, Henry Ford Health, Detroit, MI 48202, United States.ORCID https://orcid.org/0000-0002-3396-6763
Bing LuoDepartment of Radiation Oncology, Henry Ford Health, Detroit, MI 48202, United States.
Indrin J ChettyDepartment of Radiation Oncology, Cedars Sinai Medical Center, Los Angeles, CA 90048, United States.ORCID https://orcid.org/0000-0002-7979-7053
Hassan Bagher-EbadianDepartment of Radiation Oncology, Henry Ford Health, Detroit, MI 48202, United States.ORCID https://orcid.org/0000-0002-4835-9237
Farzan SiddiquiDepartment of Radiation Oncology, Henry Ford Health, Detroit, MI 48202, United States.ORCID https://orcid.org/0000-0003-1547-835X
Mohamed ElshaikhDepartment of Radiation Oncology, Henry Ford Health, Detroit, MI 48202, United States.ORCID https://orcid.org/0000-0002-2582-8897
Benjamin MovsasDepartment of Radiation Oncology, Henry Ford Health, Detroit, MI 48202, United States.ORCID https://orcid.org/0000-0003-2703-9776
Kundan ThindDepartment of Radiation Oncology, Henry Ford Health, Detroit, MI 48202, United States.ORCID https://orcid.org/0000-0002-8261-6655

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Natural language processing (NLP) is a key technique for developing medical artificial intelligence (AI) systems that leverage electronic health record data to build diagnostic and prognostic models. NLP enables the conversion of unstructured clinical text into structured data that can be fed into AI algorithms. The emergence of transformer architecture and large language models (LLMs) has led to advances in NLP for various healthcare tasks, such as entity recognition, relation extraction, sentence similarity, text summarization, and question-answering. In this article, we review the major technical innovations that underpin modern NLP models and present state-of-the-art NLP applications that employ LLMs in radiation oncology research. However, it is crucial to recognize that LLMs are prone to hallucinations, biases, and ethical violations, which necessitate rigorous evaluation and validation prior to clinical deployment. As such, we propose a comprehensive framework for assessing the NLP models based on their purpose and clinical fit, technical performance, bias and trust, legal and ethical implications, and quality assurance prior to implementation in clinical radiation oncology. Our article aims to provide guidance and insights for researchers and clinicians who are interested in developing and using NLP models in clinical radiation oncology.

Indexed as

artificial intelligencelarge language modelsnatural language processingpersonalized medicineradiation oncology

Identifiers

PMID42063997
PMCPMC13045690

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.