Evidence map›Paper›PMID 42063194›Full record

ArticleGenomics & informatics2026

Measuring the gap: correlating synthetic-to-real drift with PHI de-identification performance.

Joseph Cornelius, Fabio Rinaldi

Abstract read
In one paragraph

Article in Genomics & informatics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Joseph CorneliusDalle Molle Institute for Artificial Intelligence Research (IDSIA USI-SUPSI), Via la Santa 1, Lugano-Viganello, CH-6962, Ticino, Switzerland. joseph.cornelius@idsia.ch.
Fabio RinaldiDalle Molle Institute for Artificial Intelligence Research (IDSIA USI-SUPSI), Via la Santa 1, Lugano-Viganello, CH-6962, Ticino, Switzerland.

Funding

Centro Svizzero di Calcolo Scientifico 175Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung 10003518
6 · The paper itself

Abstract

Clinical text de-identification enables the use of electronic health records while protecting patient privacy, but public training data remain scarce and often have mismatched documentation styles. Recent works have proposed using large language models (LLMs) to generate synthetic clinical notes, but it remains unclear if they reflect distributions of real clinical notes. We examine how lexical and semantic drift across training and evaluation corpora affects protected health information (PHI) tagger performance. We generated synthetic notes from scratch for four categories using five generator LLMs and one judge LLM. Next, we fine-tuned small de-identification models on real, synthetic, and mixed corpora, and evaluated them on three external benchmarks under a harmonized label schema. Models trained on broad, clinically oriented sources transfer better than those on legal or narrowly synthetic data. These results suggest that although synthetic data lacks some real-world distributional properties, it remains useful in low-resource settings. We found that compact distributional and embedding-based drift measures moderately correlate with out-of-distribution F1 score, a practically important result because drift estimation can improve synthetic-data quality control and alignment.

Indexed as

Clinical text de-identificationDistributional driftLarge language modelsSynthetic clinical data

Identifiers

PMID42063194
PMCPMC13130710

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.