Evidence map›Paper›PMID 42059330›Full record

ReviewPhysiologia plantarum

The Role of Histone Modifications in Plant Priming and Their Analysis by Chromatin Immunoprecipitation.

Aslihan Temel, Nihal Gören-Sağlam

Abstract readReview
In one paragraph

Review in Physiologia plantarum. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Aslihan TemelDepartment of Molecular Biology and Genetics, Faculty of Science, Istanbul University, Istanbul, Türkiye.ORCID https://orcid.org/0000-0003-1861-8055
Nihal Gören-SağlamDepartment of Biology, Faculty of Science, Istanbul University, Istanbul, Türkiye.ORCID https://orcid.org/0000-0003-1255-5188

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plants are frequently exposed to adverse conditions. Priming, also known as acclimation or hardening, induces stress memory and prepares plants for future challenges by activating defense and protective mechanisms. For this reason, priming is an effective means to maintain plant yield in the face of climate change. Memory behind the priming is mainly based on epigenetic modifications, for example, histone posttranslational modifications (PTMs) on the priming-related genes. While histone PTMs are the most diverse group of epigenetic modifications and regulate gene expression via addition of chemical groups to histone amino acids, their characterization is challenging. Chromatin immunoprecipitation (ChIP) is an essential method for the characterization of histone PTMs; however, subject to many challenges, especially in plant samples. This review discusses the current understanding of histone modifications in plant stress and priming and the ChIP methodology and troubleshooting. Yield losses resulting from climate change necessitate the use of priming as an agricultural practice. In order to apply priming, an in-depth analysis of stress- or priming-induced histone PTMs is essential. ChIP has been extensively used in plant stress studies and has undergone numerous improvements. Although there are more sophisticated methods, ChIP is still regarded as a standard method for the characterization of chromatin profiles. This review aims to support researchers in the utilization of ChIP, particularly, for plant stress and/or priming studies.

Indexed as

Chromatin ImmunoprecipitationHistone CodeHistonesPlantsChromatinEpigenesis, GeneticGene Expression Regulation, PlantPlant ProteinsProtein Processing, Post-TranslationalStress, PhysiologicalChromatinHistonesPlant Proteinschromatin immunoprecipitationepigenetic modificationshistone modificationsplant primingplant stress memoryplant stress responseplant stress tolerance

Identifiers

PMID42059330
PMCPMC13130370

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.