Evidence map›Paper›PMID 42059200›Full record

ArticleNucleic acids research2026

Investigation of TRMT61B methyltransferase activity on mRNA and its effects on translation.

Dorthy Fang, John M Babich, Ryan Stanton, Isaac W Vock, Kyrillos Abdallah, Mingyi Zhu, Raj Letchuman, Richard Li, Matthew D Simon, Wendy V Gilbert and 1 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Dorthy FangDepartment of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06511, United States.
John M BabichDepartment of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06511, United States.
Ryan StantonDepartment of Molecular Biophysics & Biochemistry, Yale University, New Haven, CT 06520, United States.ORCID 0000-0003-2691-0419
Isaac W VockDepartment of Molecular Biophysics & Biochemistry, Yale University, New Haven, CT 06520, United States.
Kyrillos AbdallahDepartment of Molecular Biophysics & Biochemistry, Yale University, New Haven, CT 06520, United States.
Mingyi ZhuDepartment of Molecular Biophysics & Biochemistry, Yale University, New Haven, CT 06520, United States.
Raj LetchumanDepartment of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06511, United States.
Richard LiDepartment of Ecology and Evolutionary Biology, Yale University, New Haven, CT 06511, United States.
Matthew D SimonDepartment of Molecular Biophysics & Biochemistry, Yale University, New Haven, CT 06520, United States.ORCID 0000-0001-7423-5265
Wendy V GilbertDepartment of Molecular Biophysics & Biochemistry, Yale University, New Haven, CT 06520, United States.
Sigrid NachtergaeleDepartment of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06511, United States.ORCID 0000-0003-0231-580X

Funding

High-throughput detection of transcriptomic and epitranscriptomic variation and kinetics using MarathonRTR01HG011868 · NHGRI · YALE UNIVERSITY · PI GRAVELEY, BRENTON R., PYLE, ANNA MARIE · 2021 to 2024
$3.9M
Regulation and Function of snoRNA GenesR01GM101316 · NIGMS · YALE UNIVERSITY · PI Wendy Victoria Gilbert · 2014 to 2026
$3.9M
Predoctoral Program in Cellular, Molecular and Quantitative Biology (CMQBTP)T32GM145469 · NIGMS · YALE UNIVERSITY · PI Susan J Baserga, Charles Patrick Lusk · 2023 to 2026
$2.2M
Uncovering the regulatory principles of dynamic mRNA methylationR35GM146919 · NIGMS · YALE UNIVERSITY · PI Sigrid H Nachtergaele · 2022 to 2026
$2.0M
HHMI Gillian FellowshipNHGRI NIH HHS R01GM101316NHGRI NIH HHS R01HG011868NIGMS MIRA R35GM146919NIGMS NIH HHS R01 GM101316NIGMS NIH HHS R35 GM146919NIGMS NIH HHS T32 GM145469NIH/NIGMS 1S10OD030363-01A1NSF 2330451Yale University
6 · The paper itself

Abstract

Despite recent advances in technology to map RNA chemical modifications transcriptome-wide, the distribution of N1-methyladenosine (m1A) in messenger RNA (mRNA) remains contested, hindering a clear understanding of its function. Additionally, the enzyme(s) that installs the majority of reported mRNA m1A sites has yet to be identified. In this study, we characterized TRMT61B, an m1A methyltransferase known to methylate mitochondrial RNAs, but whose sequence preferences have been underexplored. By integrating cellular overexpression of TRMT61B and in vitro methylation of a synthetic pool of diverse human mRNA sequences, we identified a preference for a YMRA consensus motif in single-stranded RNA regions. In these experiments, TRMT61B methylated thousands of novel human mRNA sites, revealing activity on cytosolic mRNAs. We used these novel m1A-modifiable sequences to test the effects of m1A on translation of luciferase reporters and on ribosome recruitment to modified transcripts in the pool. We found that m1A addition can significantly affect translation and ribosome recruitment, but that these effects vary by transcript. Taken together, our results inform future studies of TRMT61B and mRNA modifications, and emphasize that studies of m1A regulation of mRNA must be carried out and interpreted in a highly context-aware manner.

Indexed as

Protein BiosynthesisRNA, MessengertRNA MethyltransferasesAdenosineHEK293 CellsHumansRibosomesRNA MethylationAdenosineRNA, MessengertRNA Methyltransferases

Identifiers

PMID42059200
PMCPMC13129541

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.