Evidence map›Paper›PMID 42057603›Full record

ArticleAngewandte Chemie (International ed. in English)2026

Imaging of Staphylococcus aureus Infections and Biofilms Using a Selective Covalent Probe for the Unique Serine Hydrolase FphE.

Emily C Woods, Tulsi Upadhyay, Ki Wan Park, Shih-Po Su, Zhen Xiao, Jianghong Rao, Tulio A Valdez, Jeyun Jo, Matthew Bogyo

Abstract read
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In one paragraph

Article in Angewandte Chemie (International ed. in English), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Emily C WoodsDepartment of Pathology, Stanford University School of Medicine, Stanford, United States.ORCID 0000-0003-3140-8458
Tulsi UpadhyayDepartment of Pathology, Stanford University School of Medicine, Stanford, United States.ORCID 0000-0001-5547-8683
Ki Wan ParkDepartment of Otolaryngology-Head & Neck Surgery Divisions, Stanford University School of Medicine, Stanford, United States.ORCID 0000-0002-7513-6151
Shih-Po SuDepartment of Pathology, Stanford University School of Medicine, Stanford, United States.
Zhen XiaoDepartment of Radiology, Molecular Imaging Program At Stanford, Stanford University School of Medicine, Stanford, United States.
Jianghong RaoDepartment of Radiology, Molecular Imaging Program At Stanford, Stanford University School of Medicine, Stanford, United States.ORCID 0000-0002-5143-9529
Tulio A ValdezDepartment of Otolaryngology-Head & Neck Surgery Divisions, Stanford University School of Medicine, Stanford, United States.
Jeyun JoDepartment of Pathology, Stanford University School of Medicine, Stanford, United States.ORCID 0000-0002-6701-0452
Matthew BogyoDepartment of Pathology, Stanford University School of Medicine, Stanford, United States.ORCID 0000-0003-3753-4412

Funding

Chemical probes for imaging and treatment of otitis mediaR01EB037592 · NIBIB · STANFORD UNIVERSITY · PI Matthew Bogyo · 2025 to 2026
$993k
Molecular Imaging for diagnosis and monitoring of Otitis MediaR01DC021326 · NIDCD · STANFORD UNIVERSITY · PI VALDEZ, TULIO ALBERTO · 2024 to 2024
$726k
NIH HHS R01 DC021326NIH HHS R01 EB037592
6 · The paper itself

Abstract

Staphylococcus aureus is the leading cause of soft tissue infections which can often be treated with antibiotics. However, it can also cause significant mortality and morbidity from systemic infections and infections of surgical implants. Implant infections typically require invasive surgery, and treatment often necessitates removal of the implant because S. aureus biofilms are extremely difficult to eradicate with antibiotic treatment alone. Therefore, there is a significant need for improved diagnostic tools for rapid, noninvasive confirmation of S. aureus infections. We recently developed an activity-based probe containing an oxadiazolone electrophile that selectively and covalently labels the S. aureus-specific serine hydrolase, FphE. Here we describe a Cy5-labeled version of the probe, JJ-OX-012, and its characterization as an imaging agent for detecting biofilms both in vitro and in vivo. The probe labeled S. aureus biofilms in vitro, with virtually no background labeling of bacteria that lack FphE expression, such as Escherichia coli. Furthermore, using a mouse surgical implant infection model, we demonstrate that JJ-OX-012 can be used for noninvasive fluorescent imaging to detect S. aureus biofilms in vivo. Overall, these findings support the potential for using covalent probes targeting FphE as imaging agents for rapid detection and diagnosis of staphylococcal infections in vivo.

Indexed as

BiofilmsFluorescent DyesStaphylococcal InfectionsStaphylococcus aureusAnimalsCarbocyaninesMiceOxadiazolesCarbocyaninesFluorescent DyesOxadiazolesactivity‐based probefluorescent probesimaging agentsoxadiazoloneStaphylococcus aureus biofilm

Identifiers

PMID42057603

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.