Evidence map›Paper›PMID 42055320›Full record

ArticleKidney international2026

A MEF2C transcription factor network regulates proliferation of glomerular endothelial cells in diabetic kidney disease.

Ricardo Melo Ferreira, Debora L Gisch, Carrie L Phillips, Ying-Hua Cheng, Nicholas Lucarelli, Soumya Yennapureddy, Maansi Asthana, Blue B Lake, William S Bowen, Fang Fang and 23 more

Abstract read
In one paragraph

Article in Kidney international, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Observational
  3. Article
  4. Article
4 · The record

Corrections and comments

  • Update of
    A2024
5 · Who and what money

Authors and funding

33 authors.

Ricardo Melo FerreiraDepartment of Medicine, Indiana University School of Medicine, Indianapolis, Indiana, USA.
Debora L GischDepartment of Medicine, Indiana University School of Medicine, Indianapolis, Indiana, USA.
Carrie L PhillipsDepartment of Medicine, Indiana University School of Medicine, Indianapolis, Indiana, USA.
Ying-Hua ChengDepartment of Medicine, Indiana University School of Medicine, Indianapolis, Indiana, USA.
Nicholas LucarelliDepartment of Biomedical Engineering, University of Florida, Gainesville, Florida, USA.
Soumya YennapureddyDepartment of Medicine, Indiana University School of Medicine, Indianapolis, Indiana, USA.
Maansi AsthanaDepartment of Medicine, Indiana University School of Medicine, Indianapolis, Indiana, USA.
Blue B LakeDepartment of Bioengineering, University of California, La Jolla, California, USA.
William S BowenDepartment of Medicine, Indiana University School of Medicine, Indianapolis, Indiana, USA.
Fang FangDepartment of Medicine, Indiana University School of Medicine, Indianapolis, Indiana, USA.
Mahla AsghariDepartment of Medicine, Indiana University School of Medicine, Indianapolis, Indiana, USA.
Angela SaboDepartment of Medicine, Indiana University School of Medicine, Indianapolis, Indiana, USA.
Daria BarwinskaDepartment of Medicine, Indiana University School of Medicine, Indianapolis, Indiana, USA.
Michael J FerkowiczDepartment of Medicine, Indiana University School of Medicine, Indianapolis, Indiana, USA.
Robert D TotoDepartment of Medicine, University of Texas Southwestern, Dallas, Texas, USA.
John R SedorDepartment of Medicine, Cleveland Clinic, Cleveland, Ohio, USA.
Sylvia E RosasJoslin Diabetes Center, Harvard Medical School, Boston, Massachusetts, USA.
Petter BjornstadDivision of Metabolism, Endocrinology and Nutrition, University of Washington Medicine Diabetes Institute, University of Washington, Seattle, Washington, USA.
Jeffrey B HodginDepartment of Medicine, University of Michigan, Ann Arbor, Michigan, USA.
Charles E AlpersDepartment of Laboratory Medicine and Pathology, University of Washington, Seattle, Washington, USA.
Pinaki SarderDepartment of Biomedical Engineering, University of Florida, Gainesville, Florida, USA.
Jonathan HimmelfarbDepartment of Medicine, Mount Sinai School of Medicine, New York, New York, USA.
Jennifer A SchaubDepartment of Medicine, University of Michigan, Ann Arbor, Michigan, USA.
Viji NairDepartment of Medicine, University of Michigan, Ann Arbor, Michigan, USA.
Seth WinfreeDepartment of Medicine, Indiana University School of Medicine, Indianapolis, Indiana, USA.
Timothy A SuttonDepartment of Medicine, Indiana University School of Medicine, Indianapolis, Indiana, USA.
Katherine J KellyDepartment of Medicine, Indiana University School of Medicine, Indianapolis, Indiana, USA.
Kidney Precision Medicine Project
Matthias KretzlerDepartment of Medicine, University of Michigan, Ann Arbor, Michigan, USA.
Sanjay JainDepartment of Medicine, Washington University in Saint Louis, St. Louis, Missouri, USA.
Tarek M El-AchkarDepartment of Medicine, Indiana University School of Medicine, Indianapolis, Indiana, USA.
Pierre C DagherDepartment of Medicine, Indiana University School of Medicine, Indianapolis, Indiana, USA.
Michael T EadonDepartment of Medicine, Indiana University School of Medicine, Indianapolis, Indiana, USA. Electronic address: meadon@iu.edu.

Funding

Central Hub for Kidney Precision MedicineU24DK114886 · NIDDK · UNIVERSITY OF WASHINGTON · PI Jonathan Himmelfarb, Matthias Kretzler · 2022 to 2026
$21.1M
KPMP Kidney Mapping and Atlas Project (KMAP)U01DK133090 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Jonathan Himmelfarb, Matthias Kretzler · 2022 to 2026
$10.4M
Kidney single cell and spatial molecular atlas project - KIDSSMAPU54DK134301 · NIDDK · WASHINGTON UNIVERSITY · PI JAIN, SANJAY · 2022 to 2025
$7.8M
Integrated spatial interrogation of cellular and molecular signatures of human kidney diseaseU01DK114923 · NIDDK · INDIANA UNIVERSITY INDIANAPOLIS · PI Tarek Maurice Ashkar, Pierre C Dagher · 2022 to 2026
$5.4M
Single cell multiomic and spatial atlas of acute and chronic kidney injuryU01DK114933 · NIDDK · WASHINGTON UNIVERSITY · PI Sanjay Jain · 2022 to 2026
$5.0M
Computational Imaging of Renal Structures for Diagnosing DiabeticNephropathyR01DK114485 · NIDDK · UNIVERSITY OF FLORIDA · PI Michael Thomas Eadon, Avi Z Rosenberg · 2018 to 2026
$4.7M
Artificial Intelligence-based & Ethically-focused Multi-Modal Data Integration Framework for Screening, Diagnosing, and Caring for CKD PatientsOT2OD038014 · OD · UNIVERSITY OF FLORIDA · PI Michael Thomas Eadon, Pinaki Sarder · 2025 to 2026
$4.0M
Spatial Multi-Omics to Profile Metabolic Pathways for Kidney DiseaseU01DK114920 · NIDDK · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Christopher R Anderton, Kumar Sharma · 2022 to 2026
$3.9M
Boston Chronic Kidney Disease Research Biopsy CenterU01DK133092 · NIDDK · BOSTON MEDICAL CENTER · PI Sylvia E Rosas, Sushrut S. Waikar · 2022 to 2026
$3.5M
Multimodal Imaging Mass Spectrometry and Spatial Omics for the Human KidneyU01DK133766 · NIDDK · VANDERBILT UNIVERSITY · PI Jeffrey M Spraggins · 2022 to 2026
$3.4M
PREcision Medicine through IntErrogation of Rna in the kidnEy (PREMIERE)U01DK114907 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Nir Hacohen, Jeffrey Benton Hodgin · 2022 to 2026
$3.2M
Drug-gene-nutraceutical interactions of cannabidiolR01AT011463 · NCCIH · INDIANA UNIVERSITY INDIANAPOLIS · PI Michael Thomas Eadon · 2022 to 2026
$2.9M
NCCIH NIH HHS R01 AT011463NIDDK NIH HHS R01 DK114485NIDDK NIH HHS U01 DK114866NIDDK NIH HHS U01 DK114907NIDDK NIH HHS U01 DK114908NIDDK NIH HHS U01 DK114920NIDDK NIH HHS U01 DK114923NIDDK NIH HHS U01 DK114933NIDDK NIH HHS U01 DK133081NIDDK NIH HHS U01 DK133090NIDDK NIH HHS U01 DK133091NIDDK NIH HHS U01 DK133092NIDDK NIH HHS U01 DK133093NIDDK NIH HHS U01 DK133095NIDDK NIH HHS U01 DK133097NIDDK NIH HHS U01 DK133113NIDDK NIH HHS U01 DK133766NIDDK NIH HHS U01 DK133768NIDDK NIH HHS U24 DK114886NIDDK NIH HHS U54 DK134301NIH HHS OT2 OD038014
6 · The paper itself

Abstract

introductionThe maintenance of a healthy epithelial-endothelial juxtaposition requires crosstalk within glomerular cellular niches. Here, we sought to understand the spatially anchored regulation and transition of endothelial and mesangial cells from health to injury in DKD.

methodsFrom 132 human kidney samples, an integrated multiomics approach was leveraged to identify cellular niches, cell-cell communication, cell injury trajectories, and regulatory transcription factor networks in glomerular capillary endothelial (EC-GC) and mesangial cells. Data were culled from single nucleus RNA, ATAC-sequencing and four orthogonal spatial transcriptomic technologies for correlation with histopathological and clinical trial data.

resultsWe identified a cellular niche in diabetic glomeruli enriched in a proliferative endothelial cell subtype (prEC) and altered vascular smooth muscle cells (VSMCs). Cellular communication within this niche maintained pro-angiogenic signaling with loss of anti-angiogenic factors. We identified a transcription factor network of MEF2C, MEF2A, and TRPS1 which regulated SEMA6A and PLXNA2, a receptor-ligand pair opposing angiogenesis. In silico knockout of the transcription factor network accelerated the transition from healthy EC-GCs toward a degenerative injured endothelial phenotype, with concomitant disruption of EC-GC and prEC expression patterns. Glomeruli enriched in the prEC niche had histologic evidence of neovascularization. MEF2C activity was increased in diabetic glomeruli with nodular mesangial sclerosis. The gene regulatory network (GRN) of MEF2C was dysregulated in EC-GCs of patients with DKD, but sodium glucose transporter-2 inhibitor (SGLT2i) treatment reversed the MEF2C GRN effects of DKD.

conclusionsThe MEF2C, MEF2A, and TRPS1 transcription factor network carefully balances the fate of the EC-GC in DKD. When the transcription factor network is "on" or over-expressed in DKD, EC-GCs may progress to a prEC state, while transcription factor suppression leads to cell death. SGLT2i therapy may restore the balance of MEF2C activity.

Indexed as

Cell ProliferationDiabetic NephropathiesEndothelial CellsKidney GlomerulusMEF2 Transcription FactorsAnimalsCell CommunicationGene Regulatory NetworksHumansMesangial CellsSignal TransductionSpatial TranscriptomicsMEF2C protein, humanMEF2 Transcription Factorsepigeneticsnichenodular mesangial glomerulosclerosisopen chromatinplexin A2semaphorin 6Aspatial transcriptomics

Identifiers

PMID42055320
PMCPMC13231425

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.