ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2026
Identification of candidate genes for deep-sowing tolerance in rice by genome-wide association study and transcriptome sequencing.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.
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Abstract
Direct-seeded rice is of great significance for ensuring food security. The hypoxic conditions under deep sowing impose significant abiotic stress to severely inhibit seed germination and seedling emergence in direct-seeded rice. Improvement of rice tolerance to deep-sowing germination stress is critical for promoting the seedling and grain yield of direct-seeded rice. In this study, we employed 276 rice germplasms to investigate the hypoxic germination (HG)-related traits through genome-wide association study (GWAS). Transcriptome profiling was conducted on germplasms with strong and weak HG tolerance under both deep-sowing and control conditions. GWAS identified 76 HG-associated genes, among which 27 genes were also detected by transcriptome profiling. Gene functional annotation and haplotype analysis screened four important candidate genes (LOC_Os01g51870, LOC_Os03g11510, LOC_Os05g01440, and LOC_Os07g35350) related to HG under deep sowing. The findings establish a genetic framework for improving HG tolerance in rice under deep sowing through molecular breeding strategies.
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