Evidence map›Paper›PMID 42048545›Full record

ArticleThe journal of physical chemistry. A2026

Construction of Arbitrary-Order Internal Coordinate Transformations to Improve Studies of Large-Amplitude Motions.

Mark A Boyer, Daniel P Tabor

Abstract read
In one paragraph

Article in The journal of physical chemistry. A, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Mark A BoyerTexas A & M University, Department of Chemistry, 580 Ross St, College Station, Texas 77843, United States.ORCID 0000-0003-4740-5307
Daniel P TaborTexas A & M University, Department of Chemistry, 580 Ross St, College Station, Texas 77843, United States.ORCID 0000-0002-8680-6667

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Internal coordinates and their derivatives underpin the efficient treatment of geometry optimizations, high-resolution spectroscopic simulation, and the fitting of potential surfaces in quantum chemistry. Existing descriptions of the construction of internal coordinate derivatives generally either lack simplicity or generality. In this paper, we provide a simple framework for evaluating any internal coordinate derivative to any order and an automatic approach to obtain the corresponding inverse transformation. Through further extension to transformations between internal coordinate systems, this approach provides a complete, generic method for handling a wide variety of molecular problems. The utility of this construction is demonstrated by investigations into the behavior of internal coordinate interpolations for studying isomerizations, quantifying the coupling between carbonyl stretches and a complex stretch coordinate in an organometallic system, and analysis of the performance of a machine learned interatomic potential in computing anharmonic frequencies as a function of low-frequency coordinate distortions. This approach is shown to be numerically efficient as well as general, and a reference implementation is provided.

Identifiers

PMID42048545
PMCPMC13158920

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.