Evidence map›Paper›PMID 42045235›Full record

ArticleNature communications2026

A family of ribosome hibernation factors widespread in Archaea.

Clément Madru, Gabrielle Bourgeois, Rémi Dulermo, Régine Capeyrou, Gwendoline Joncour, Karima Figuigui, Magalie Duchateau, Julia Chamot-Rooke, Claire Duboc, Stéphane l'Haridon and 8 more

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Clément Madru *Structural Biology of the Cell, BIOC, CNRS, Ecole Polytechnique, Institut Polytechnique de Paris, 91120, Palaiseau, France.ORCID http://orcid.org/0000-0002-5412-8822
Gabrielle Bourgeois *Structural Biology of the Cell, BIOC, CNRS, Ecole Polytechnique, Institut Polytechnique de Paris, 91120, Palaiseau, France.
Rémi Dulermo *Univ Brest, Ifremer, Biology and Ecology of Deep Marine Ecosystems (BEEP), 29280, Plouzané, France.ORCID http://orcid.org/0000-0002-4450-7482
Régine CapeyrouUniversity of Toulouse, CNRS, CBI, Toulouse, France.
Gwendoline JoncourUniv Brest, Ifremer, Biology and Ecology of Deep Marine Ecosystems (BEEP), 29280, Plouzané, France.ORCID http://orcid.org/0009-0002-8237-1632
Karima FiguiguiUniv Brest, Ifremer, Biology and Ecology of Deep Marine Ecosystems (BEEP), 29280, Plouzané, France.ORCID http://orcid.org/0009-0000-7165-8473
Magalie DuchateauProteomics Platform, Mass Spectrometry for Biology Unit, Institut Pasteur, Université de Paris-Cité, CNRS USR 2000, 75015, Paris, France.ORCID http://orcid.org/0000-0001-5475-3065
Julia Chamot-RookeProteomics Platform, Mass Spectrometry for Biology Unit, Institut Pasteur, Université de Paris-Cité, CNRS USR 2000, 75015, Paris, France.ORCID http://orcid.org/0000-0002-9427-543X
Claire DubocUniv Brest, Ifremer, Biology and Ecology of Deep Marine Ecosystems (BEEP), 29280, Plouzané, France.
Stéphane l'HaridonUniv Brest, Ifremer, Biology and Ecology of Deep Marine Ecosystems (BEEP), 29280, Plouzané, France.ORCID http://orcid.org/0000-0002-2645-5682
Logan Mc TeerUniv Brest, Ifremer, Biology and Ecology of Deep Marine Ecosystems (BEEP), 29280, Plouzané, France.
Marta KwapiszUniversity of Toulouse, CNRS, CBI, Toulouse, France.
Béatrice Clouet-d'OrvalUniversity of Toulouse, CNRS, CBI, Toulouse, France.
Marie BouvierUniversity of Toulouse, CNRS, CBI, Toulouse, France.ORCID http://orcid.org/0000-0002-2111-052X
Yves MechulamStructural Biology of the Cell, BIOC, CNRS, Ecole Polytechnique, Institut Polytechnique de Paris, 91120, Palaiseau, France.ORCID http://orcid.org/0000-0003-3586-3554
Guillaume BorrelDepartment of Microbiology, Unit Evolutionary Biology of the Microbial Cell, Institut Pasteur, 75015, Paris, France. guillaume.borrel@pasteur.fr.ORCID http://orcid.org/0000-0003-4893-8180
Emmanuelle SchmittStructural Biology of the Cell, BIOC, CNRS, Ecole Polytechnique, Institut Polytechnique de Paris, 91120, Palaiseau, France. emmanuelle.schmitt@polytechnique.edu.ORCID http://orcid.org/0000-0001-7532-338X
Didier FlamentUniv Brest, Ifremer, Biology and Ecology of Deep Marine Ecosystems (BEEP), 29280, Plouzané, France. dflament@ifremer.fr.ORCID http://orcid.org/0000-0002-9847-2342

Funding

Agence Nationale de la Recherche (French National Research Agency) ANR-25-CE12-4161
6 · The paper itself

Abstract

Ribosome hibernation preserves translation machinery during stress, yet its mechanisms in Archaea remain poorly defined. Using cryo-EM analysis, we studied hibernation pathways in Pyrococcus abyssi stressed cells. We identified HibA, a previously unrecognized family of hibernation factors widespread in Archaea. HibA consists of a bacterial-like HPF/RaiA domain fused to a Cystathionine Beta Synthase module. Unexpectedly, HibA binds to the ribosome in three different conformations, occupying the A, P and E sites of tRNAs, as well as that of mRNA, enhancing its ability to protect the ribosome from degradation. Idle ribosomes also frequently accumulate the archaeal homolog of eukaryotic ribosome maturation protein SBDS (aSBDS), suggesting that stressed archaeal cells may engage parallel hibernation routes in which aSBDS can complement HibA. Deletion of hibA in Thermococcus barophilus delays recovery from stationary phase and reduces 70S ribosome pools, establishing its role in ribosome preservation. Taxonomic profiling shows that many archaeal lineages encode distinct repertoires of ribosome-associated protection factors, underscoring the modular and multi-layered nature of archaeal hibernation systems. In addition, a comprehensive phylogenetic analysis highlights the evolutionary relationships between prevalent ribosome hibernation factors across Bacteria and Archaea.

Indexed as

ArchaeaArchaeal ProteinsPyrococcus abyssiRibosomal ProteinsRibosomesCryoelectron MicroscopyPhylogenyProtein BiosynthesisRNA, MessengerRNA, TransferThermococcusArchaeal ProteinsRibosomal ProteinsRNA, MessengerRNA, Transfer

Identifiers

PMID42045235
PMCPMC13324472

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.