Evidence map›Paper›PMID 42040279›Full record

ArticleFrontiers in plant science2026

Dynamic regulation of secondary metabolites and agarwood aroma compounds in

Tianjiao Ma, Hui Meng, Jianhe Wei, Yun Yang

Abstract read
In one paragraph

Article in Frontiers in plant science, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Tianjiao MaInstitute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China.
Hui MengInstitute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China.
Jianhe WeiInstitute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China.
Yun YangInstitute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Agarwood, a valuable aromatic resin from Methods: We employed a sterile Results: We identified 14,784 metabolites, including 118 agarwood-characteristic sesquiterpene skeletons and 2-(2-phenylethyl)chromones (PECs). Three core biosynthetic pathways-flavonoid, phenylpropanoid, and terpenoid-converge through shared precursors (acetyl-CoA and malonyl-CoA) and branch-point enzymes (CHS, TPS, PKS), orchestrated by jasmonic acid (JA)-like signals. The metabolic trajectory exhibited a triphasic pattern: nutrient mobilization (0-7d), biosynthetic burst with peak sesquiterpene/chromone accumulation at day 14, and defensive restructuring (21-28d) with P450-mediated modifications. Quantitative correlation analysis revealed significant negative relationships (|r| ≈ 0.63-0.74, FDR<0.05) between precursor depletion and agarwood compound synthesis. Volatile profiling identified 116 compounds, with aromatic compounds (42) and sesquiterpenes (5) as key odorants, accumulating in stage-specific patterns aligned with precursor flux redirection. Conclusion: This study establishes a "precursor pool-pathway convergence-temporal programming" framework for fungal agarwood biogenesis. The integrated multi-omics approach quantitatively links substrate consumption to product synthesis. It provides actionable guidance for optimized bioproduction: segmented harvesting (sesquiterpenes at 7-14d, chromones avoiding the day-21 energy trough), JA-signal priming in the early phase, and P450-enhancement strategies in the late phase for structural diversification. These findings advance mechanistic understanding and enable scalable, quality-controlled agarwood biomanufacturing.

Indexed as

agarwoodAquilaria sinensisArthrinium sp.endophytic fungusGC–MSsecondary metabolitestemporal dynamicswidely targeted metabolomics

Identifiers

PMID42040279
PMCPMC13106441

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.