Evidence map›Paper›PMID 42039604›Full record

ArticlebioRxiv : the preprint server for biology2026

Mapping Strigolactone Hydrolysis in DWARF14 via QM/MM String Method.

Tanner J Dean, Jiming Chen, Diwakar Shukla

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Tanner J DeanCenter for Biophysics and Quantitative Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801.ORCID 0000-0002-3423-4177
Jiming ChenDepartment of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, IL 61801.ORCID 0000-0001-5232-5382
Diwakar ShuklaDepartment of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, IL 61801.ORCID 0000-0003-4079-5381

Funding

Training Program at the Chemistry Biology InterfaceT32GM136629 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI Paul Hergenrother · 2020 to 2026
$4.5M
Elucidating sequence, structural and dynamic basis of the functional regulation of membrane proteinsR35GM142745 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI SHUKLA, DIWAKAR · 2021 to 2025
$1.8M
NIGMS NIH HHS R35 GM142745NIGMS NIH HHS T32 GM136629
6 · The paper itself

Abstract

Strigolactone signaling is unusual among plant hormone pathways in that its receptor, DWARF14 (D14), also catalyzes the hydrolysis of the hormone. However, key aspects of this reaction remain unresolved including (i) whether hydrolysis proceeds via the canonical acyl substitution method initiated by nucleophilic attack on the butenolide (D-ring) or an alternative Michael addition at the enol-ether bridge, and (ii) the identity of the hydrolysis-induced covalent modification that promotes receptor activation. In this work we test these competing mechanistic hypotheses using QM/MM string method simulations of the D14-GR24 complex. Our simulations show that the acyl substitution pathway initiated by nucleophilic attack of the D-ring is strongly favored, supporting the canonical mode proposed by experimental studies. Furthermore, we find that multiple covalent adducts involving the butenolide ring and catalytic residues can form and interconvert along the reaction coordinate. These results suggest that the hydrolysis-induced covalent modification is not a single static species, but a dynamic ensemble of chemically related states. Our findings provide a mechanistic framework that reconciles previously conflicting experimental observations and clarifies the chemical basis by which strigolactone hydrolysis promotes receptor activation.

Identifiers

PMID42039604
PMCPMC13105017

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.