Evidence map›Paper›PMID 42039541›Full record

ArticlebioRxiv : the preprint server for biology2026

An unrecognized host response to microbial exposure resets circadian timing.

Devons Mo, Ti Dung Ngoc Lam, Ella Baker, Olivia P Fraser, Jack Dorling, John S O'Neill, Gerben van Ooijen, Antony N Dodd, Carrie L Partch, Priya Crosby and 1 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Devons MoDepartment of Microbiology and Environmental Toxicology, University of California, Santa Cruz; Santa Cruz, USA.ORCID 0000-0003-2396-9204
Ti Dung Ngoc LamDepartment of Microbiology and Environmental Toxicology, University of California, Santa Cruz; Santa Cruz, USA.
Ella BakerDepartment of Cell and Developmental Biology, John Innes Centre; Norwich Research Park, Norwich, UK.
Olivia P FraserInstitute of Molecular Plant Sciences, School of Biological Sciences, University of Edinburgh; Edinburgh, UK.
Jack DorlingDepartment of Cell and Developmental Biology, John Innes Centre; Norwich Research Park, Norwich, UK.ORCID 0000-0002-2012-3054
John S O'NeillMRC Laboratory of Molecular Biology; Cambridge, UK.ORCID 0000-0003-2204-6096
Gerben van OoijenInstitute of Molecular Plant Sciences, School of Biological Sciences, University of Edinburgh; Edinburgh, UK.ORCID 0000-0001-7967-0637
Antony N DoddDepartment of Cell and Developmental Biology, John Innes Centre; Norwich Research Park, Norwich, UK.ORCID 0000-0001-6859-0105
Carrie L PartchDepartment of Chemistry and Biochemistry, University of California, Santa Cruz; Santa Cruz, USA.ORCID 0000-0002-4677-2861
Priya CrosbyDepartment of Chemistry and Biochemistry, University of California, Santa Cruz; Santa Cruz, USA.ORCID 0000-0002-7532-7708
Jacqueline M KimmeyDepartment of Microbiology and Environmental Toxicology, University of California, Santa Cruz; Santa Cruz, USA.ORCID 0000-0003-1330-8525

Funding

Structures and mechanisms of circadian rhythms from cyanobacteria to humansR35GM141849 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI PARTCH, CARRIE L · 2021 to 2025
$4.6M
Microbial regulation of vertebrate circadian clocksR35GM147509 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI Jacqueline Misum Kimmey · 2022 to 2026
$1.9M
NIGMS NIH HHS R35 GM141849NIGMS NIH HHS R35 GM147509Wellcome Trust
6 · The paper itself

Abstract

As ubiquitous features of every natural environment, microbes have profoundly shaped eukaryotic biology throughout evolution. Circadian clocks evolved in all domains of life as central regulators that align physiology with environmental cycles, yet whether they respond directly to microbial signals remains unknown. Here, we demonstrate that evolutionarily diverse microbes potently reset mammalian cellular clocks and can drive phase shifts in plants and algae, indicating cross-kingdom effects of microbes on circadian rhythms. In mammals, exposure to soluble bacterial components distinct from canonical innate immune ligands induces acute PER2 upregulation independently of

Identifiers

PMID42039541
PMCPMC13104998

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.