Evidence map›Paper›PMID 42036542›Full record

ArticleWorld journal of microbiology & biotechnology2026

Comprehensive characterization and genome-resolved insights into the probiotic potential of Bacillus sp. KNSH39 isolated from Litopenaeus vannamei intestine.

Patima Permpoonpattana, Sk Injamamul Islam, Luu Tang Phuc Khang, Orathai Dangsawat, Papungkorn Sangsawad, Shu-Dan Yeh, Kritsada Phetduang, Phatthanaphong Therdtatha, Sarayut Onsanit, Nguyen Vu Linh

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Article in World journal of microbiology & biotechnology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Patima PermpoonpattanaDepartment of Agricultural Science and Technology, Faculty of Innovative Agriculture, Fisheries and Food, Prince of Songkla University, Surat Thani Campus, Surat Thani, 84000, Thailand.
Sk Injamamul IslamCanadian River Institute, Department of Biology, University of Prince Edward Island, Charlottetown, Canada. sislam19880@upei.ca.
Luu Tang Phuc KhangAquatic Biotechnology Laboratory, Department of Animal and Aquatic Sciences, Faculty of Agriculture, Chiang Mai University, Thailand, 50200, Chiang Mai.
Orathai DangsawatScientific Laboratory and Equipment Center, Office of Surat Thani Campus, Prince of Songkla University, Surat Thani Campus, Surat Thani, 84000, Thailand.
Papungkorn SangsawadSchool of Animal Technology and Innovation, Institute of Agricultural Technology, Suranaree University of Technology, Nakhon Ratchasima, 30000, Thailand.
Shu-Dan YehDepartment of Life Sciences, National Central University, Taoyuan City, 320317, Taiwan.
Kritsada PhetduangSpecialized Research in Microbiome and Metabolome for Health Laboratory, Division of Biotechnology, Faculty of Agro-Industry, Chiang Mai University, Chiang Mai, Thailand.
Phatthanaphong TherdtathaSpecialized Research in Microbiome and Metabolome for Health Laboratory, Division of Biotechnology, Faculty of Agro-Industry, Chiang Mai University, Chiang Mai, Thailand.
Sarayut OnsanitDepartment of Fishery Resources, Faculty of Innovative Agriculture, Fisheries and Food, Prince of Songkla University, Surat Thani, 84000, Thailand.
Nguyen Vu LinhAquatic Biotechnology Laboratory, Department of Animal and Aquatic Sciences, Faculty of Agriculture, Chiang Mai University, Thailand, 50200, Chiang Mai. linhvu.n@cmu.ac.th.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Probiotic Bacillus species are being investigated as sustainable interventions to enhance health and disease resilience in aquaculture. However, the functional basis, biosafety profile, and genomic determinants of probiotic suitability in shrimp gut-associated Bacillus strains remain insufficiently characterized. In this study, a Bacillus strain (KNSH39) isolated from the intestine of Pacific white shrimp (Litopenaeus vannamei) was evaluated using integrated phenotypic, functional, and genome-resolved approaches. Classical assays assessed morphology, sporulation, antibiotic susceptibility, gastrointestinal tolerance, storage stability, and antibacterial activity of cell-free supernatant under thermal and pH stress. Hybrid whole-genome sequencing using Oxford Nanopore Technologies and Illumina platforms enabled high-quality assembly, followed by comprehensive functional annotation, mobilome analysis, biosynthetic gene cluster prediction, and comparative genomics. KNSH39 exhibited strong sporulation capacity (98.04%), a non-hemolytic phenotype, high tolerance to acidic and bile conditions, and formulation-dependent storage stability, with gel-bead encapsulation markedly improving viability. Cell-free supernatant inhibited Streptococcus agalactiae and Aeromonas hydrophila in a concentration-, time-, temperature-, and pH-dependent manner, retaining activity after heating to 120 °C. Genome analysis revealed a 5.49 Mb Bacillus cereus–group genome with complete central metabolic pathways, extensive quorum sensing systems, diverse secondary metabolite biosynthetic gene clusters, and an open pangenome structure. Collectively, these findings suggest that KNSH39 strain presents as a promising aquaculture probiotic candidate, exhibiting thermally stable antibacterial potential and well-defined genomic attributes.

Indexed as

BacillusGenome, BacterialIntestinesPenaeidaeProbioticsAnimalsAnti-Bacterial AgentsAquacultureHydrogen-Ion ConcentrationPhylogenySpores, BacterialWhole Genome SequencingAnti-Bacterial AgentsBacillusComparative genomicsLitopenaeus vannameiProbioticsWhole-genome sequencing

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.