Evidence map›Paper›PMID 42031533›Full record

ArticleGut2026

Differential intrahepatic integrated HBV DNA patterns between HBeAg-positive and HBeAg-negative chronic hepatitis B.

Daryl T-Y Lau, Elena S Kim, Zhili Wang, Wendy C King, David E Kleiner, Marc G Ghany, Yuanjie Liu, Raymond Chung, Richard K Sterling, Gavin Cloherty and 5 more

Abstract read
In one paragraph

Article in Gut, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors.

Daryl T-Y LauLiver Center, Division of Gastroenterology and Hepatology, Beth Israel Deaconess Medical Center, Boston, Massachusetts, USA dlau@bidmc.harvard.edu ying-hsiu.su@bblumberg.org guoh4@upmc.edu.ORCID http://orcid.org/0000-0003-4139-1987
Elena S KimDepartment of Microbiology and Molecular Genetics; Cancer Virology Program, UPMC Hillman Cancer Center, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, USA.
Zhili WangJBS Science Inc, Doylestown, Pennsylvania, USA.
Wendy C KingEpidemiology, University of Pittsburgh Graduate School of Public Health, Pittsburgh, Pennsylvania, USA.
David E KleinerLaboratory of Pathology, The National Cancer Institute, National Institutes of Health, Bethesda, Maryland, USA.ORCID http://orcid.org/0000-0003-3442-4453
Marc G GhanyLiver Diseases Branch, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, Maryland, USA.ORCID http://orcid.org/0000-0003-2837-0188
Yuanjie LiuDepartment of Microbiology and Molecular Genetics; Cancer Virology Program, UPMC Hillman Cancer Center, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, USA.ORCID http://orcid.org/0000-0002-5597-6815
Raymond ChungGastrointestinal Unit, Massachusetts General Hospital, Boston, Massachusetts, USA.
Richard K SterlingCentral Virginia Veterans Healthcare System, Richmond, Virginia, USA.ORCID http://orcid.org/0000-0002-8637-2475
Gavin ClohertyInfectious Disease Research, Abbott Laboratories, Abbott Park, Illinois, USA.
Selena Y LinJBS Science Inc, Doylestown, Pennsylvania, USA.
Hsin-Ni LiuTranslational Medical Science, The Baruch S. Blumberg Institute, Doylestown, Pennsylvania, USA.
Ning SunDepartment of Microbiology and Molecular Genetics; Cancer Virology Program, UPMC Hillman Cancer Center, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, USA.ORCID http://orcid.org/0009-0006-0211-5241
Ying-Hsiu SuJBS Science Inc, Doylestown, Pennsylvania, USA dlau@bidmc.harvard.edu ying-hsiu.su@bblumberg.org guoh4@upmc.edu.
Haitao GuoDepartment of Microbiology and Molecular Genetics; Cancer Virology Program, UPMC Hillman Cancer Center, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, USA dlau@bidmc.harvard.edu ying-hsiu.su@bblumberg.org guoh4@upmc.edu.ORCID http://orcid.org/0000-0002-7146-916X

Funding

Postmortem PathologyZICBC010685 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI KLEINER, DAVID ERWIN · 2009 to 2025
$14.3M
Harvard Hepatitis B ConsortiumU01DK082919 · NIDDK · BETH ISRAEL DEACONESS MEDICAL CENTER · PI CHUNG, RAYMOND T, LAU, DARYL T · 2008 to 2019
$4.7M
Cooperative mechanisms of HIV-enhanced liver fibrogenesis in HBV CoinfectionR01AI155140 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI CHUNG, RAYMOND T, LIN, WENYU · 2020 to 2025
$3.5M
Molecular Mechanisms of HBV cccDNA FormationR01AI110762 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI GUO, HAITAO · 2016 to 2025
$3.5M
The Role of HBeAg in HBV PersistenceR01AI134818 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Haitao Guo · 2018 to 2026
$2.7M
Epigenetic Regulation of HBV cccDNA TranscriptionR01AI150255 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI GUO, HAITAO · 2020 to 2024
$2.0M
Impact of preanalytic procurement and processing variables on the detection of HCC DNA in urineU01CA275648 · NCI · BARUCH S. BLUMBERG INSTITUTE · PI Ying-Hsiu Su · 2023 to 2026
$1.5M
HBV cccDNA and integrated DNA in HIV coinfection and HBV monoinfectionR56AI179574 · NIAID · BETH ISRAEL DEACONESS MEDICAL CENTER · PI GUO, HAITAO, LAU, DARYL T · 2023 to 2023
$847k
Novel assay to detect integrated HBV DNA in urine of chronic hepatitis B patientsR43AI167169 · NIAID · JBS SCIENCE, INC. · PI LIN, SELENA · 2022 to 2023
$604k
Intramural NIH HHS ZIC BC010685NCI NIH HHS U01 CA275648NIAID NIH HHS R01 AI110762NIAID NIH HHS R01 AI134818NIAID NIH HHS R01 AI150255NIAID NIH HHS R01 AI155140NIAID NIH HHS R43 AI167169NIAID NIH HHS R56 AI179574NIDDK NIH HHS U01 DK082919
6 · The paper itself

Abstract

backgroundHepatitis B surface antigen (HBsAg) can be derived from intrahepatic covalently closed circular DNA (cccDNA) and integrated hepatitis B virus (HBV) DNA (iDNA).

objectiveWe evaluated the cccDNA and iDNA from liver tissues of 24 hepatitis B e antigen (HBeAg)(+) and 32 HBeAg(-) treatment-naïve chronic hepatitis B (CHB) participants in the North American Hepatitis B Research Network.

designFor cccDNA analysis, DNA was heat-denatured and digested by plasmid-safe ATP-dependent DNase to remove relaxed circular DNA and iDNA before real-time polymerase chain reaction. For iDNA detection, total DNA was subjected to HBV hybridisation-targeted next generation sequencing assay for identification of the HBV-host junction sequences. Comparisons of HBV cccDNA and iDNA with other virological biomarkers were assessed.

resultsIntrahepatic cccDNA, serum HBV DNA, HBV RNA, hepatitis B core related antigen and quantitative hepatitis B surface antigen were higher in HBeAg(+) CHB. Intrahepatic hepatitis B core antigen staining was present in 87% HBeAg(+) but only 13% HBeAg(-) samples (p<0.0001). HBsAg staining was frequent in over 85% in both groups. 23 (95.8%) HBeAg(+) participants had ≤50% iDNA whereas 25 (78.1%) HBeAg(-) participants had >50% iDNA of total HBV DNA in their livers. For HBeAg(+) CHB, the iDNA integration sites were random with only 15.9% localised to the direct repeat 2 (DR2)-DR1 region. For HBeAg(-) CHB, 52.4% of the iDNA integrations were clustered at DR2-DR1. Microhomology-mediated end joining patterns of double-stranded linear DNA HBV integration was more frequent in HBeAg(+) livers.

conclusionHBeAg(-) CHB was associated with high HBsAg staining concentration despite low cccDNA levels suggesting that iDNA was the primary source of HBsAg. The high frequency of DR2-DR1 iDNA distribution in HBeAg(-) CHB suggests the selection advantage and clonal expansion of this integrant in the natural history of CHB.

Indexed as

HEPATITIS BLIVER BIOPSYMOLECULAR MECHANISMS

Identifiers

PMID42031533
PMCPMC13525735

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.