Evidence map›Paper›PMID 42030604›Full record

ArticleVirology2026

Grapevine-associated picorna-like virus, an unusual virus identified in wine grapes (Vitis vinifera L.).

Edison G Reyes-Proaño, Anastasia A Gulyaeva, Gardenia E Orellana, Jungmin Lee, Eugene V Koonin, Alexander V Karasev

Abstract read
In one paragraph

Article in Virology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Edison G Reyes-ProañoDepartment of Entomology, Plant Pathology and Nematology, University of Idaho, Moscow, ID, 83844, USA.
Anastasia A GulyaevaComputational Biology Branch, Division of Intramural Research, National Library of Medicine, National Institutes of Health, Bethesda, MD, 20894, USA.
Gardenia E OrellanaDepartment of Entomology, Plant Pathology and Nematology, University of Idaho, Moscow, ID, 83844, USA.
Jungmin LeeIndependent Researcher, Corvallis, OR, 97330, USA.
Eugene V KooninComputational Biology Branch, Division of Intramural Research, National Library of Medicine, National Institutes of Health, Bethesda, MD, 20894, USA.
Alexander V KarasevDepartment of Entomology, Plant Pathology and Nematology, University of Idaho, Moscow, ID, 83844, USA. Electronic address: akarasev@uidaho.edu.

Funding

Finding Protein Sequence Motifs--Methods And ApplicationsZIALM000061 · NLM · NATIONAL LIBRARY OF MEDICINE · PI KOONIN, EUGENE V · 2009 to 2025
$10.6M
FINDING PROTEIN SEQUENCE MOTIFS--METHODS AND APPLICATIONSZ01LM000061 · NLM · NATIONAL LIBRARY OF MEDICINE · PI KOONIN, EUGENE V · 1994 to 2008
$645k
Intramural NIH HHS Z01 LM000061Intramural NIH HHS ZIA LM000061
6 · The paper itself

Abstract

A new picorna-like virus was identified in grapevines from a 21-year-old 'Tempanillo' block in eastern Oregon exhibiting leaf chlorosis and interveinal reddening, through the high-throughput sequencing (HTS) of the total RNA. This new virus was named grapevine-associated picorna-like virus (GaPLV). GaPLV has a monopartite, positive-sense, single-stranded RNA genome of 9021-nt, with a single open reading frame encoding a polyprotein that encompasses an RNA dependent RNA polymerase (RdRP), a helicase, a chymotrypsin-like protease, and three capsid proteins. The arrangement of these conserved domains in the polyprotein is so far unique among picorna-like viruses, with two structural (capsid) proteins in the N-terminal region, upstream of all other conserved domains, and one structural (capsid) domain close to the C-terminus of the polyprotein, downstream of the RdRP. In phylogenetic analysis, RdRP of GaPLV grouped inside the order Picornavirales, but outside of the known families of picorna-like viruses, at the base of the clade that includes Iflaviridae and Polycipivirdae. The presence of GaPLV in the original 'Tempranillo' samples was confirmed by RT-PCR amplifications and Sanger sequencing. Virus surveys conducted in 2023 and 2024 from five commercial vineyards in southwestern Idaho and eastern Oregon revealed GaPLV presence in six wine grape cultivars.

Indexed as

Plant DiseasesVitisCapsid ProteinsGenome, ViralOpen Reading FramesOregonPhylogenyPicornaviralesRNA-Dependent RNA PolymeraseRNA, ViralViral ProteinsCapsid ProteinsRNA-Dependent RNA PolymeraseRNA, ViralViral ProteinsGrapevineIdahoOregonPicorna-like virusViruses

Identifiers

PMID42030604
PMCPMC13676255

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.