Evidence map›Paper›PMID 42029118›Full record

ArticleApplied and environmental microbiology2026

Analysis of the genetic and phylogenetic context of

Fabien Vorimore, Mai-Lan Tran, Aurélie Cointe, Justine de Larminat, Philippe Bidet, Stéphane Bonacorsi, Carolina Silva Nodari, François-Xavier Weill, Patrick Fach, Sabine Delannoy

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Fabien VorimoreLaboratory for Food Safety, Unit of "Pathogenic E. coli" (COLiPATH) and Genomics platform "IdentyPath" (IDPA), Anses (The French Agency for Food, Environmental and Occupational Health and Safety), Maisons-Alfort, France.ORCID 0000-0001-7678-5551
Mai-Lan TranLaboratory for Food Safety, Unit of "Pathogenic E. coli" (COLiPATH) and Genomics platform "IdentyPath" (IDPA), Anses (The French Agency for Food, Environmental and Occupational Health and Safety), Maisons-Alfort, France.ORCID 0000-0003-3161-8113
Aurélie CointeService de Microbiologie, Centre National de Référence Escherichia coli, AP-HP, Hôpital Robert-Debré (DMU BioGeM), F-75019, Université Paris Cité, IAME, UMR 1137, INSERM, Paris, France.ORCID 0000-0002-6484-0696
Justine de LarminatService de Microbiologie, Centre National de Référence Escherichia coli, AP-HP, Hôpital Robert-Debré (DMU BioGeM), F-75019, Université Paris Cité, IAME, UMR 1137, INSERM, Paris, France.ORCID 0009-0008-2711-0185
Philippe BidetService de Microbiologie, Centre National de Référence Escherichia coli, AP-HP, Hôpital Robert-Debré (DMU BioGeM), F-75019, Université Paris Cité, IAME, UMR 1137, INSERM, Paris, France.ORCID 0009-0009-8615-4695
Stéphane BonacorsiService de Microbiologie, Centre National de Référence Escherichia coli, AP-HP, Hôpital Robert-Debré (DMU BioGeM), F-75019, Université Paris Cité, IAME, UMR 1137, INSERM, Paris, France.ORCID 0000-0001-6447-6874
Carolina Silva NodariInstitut Pasteur, Université Paris Cité, Unité des Bactéries pathogènes entériques, Centre National de Référence des Escherichia coli, Shigella et Salmonella, Paris, France.ORCID 0000-0002-2361-5732
François-Xavier WeillInstitut Pasteur, Université Paris Cité, Unité des Bactéries pathogènes entériques, Centre National de Référence des Escherichia coli, Shigella et Salmonella, Paris, France.ORCID 0000-0001-9941-5799
Patrick FachLaboratory for Food Safety, Unit of "Pathogenic E. coli" (COLiPATH) and Genomics platform "IdentyPath" (IDPA), Anses (The French Agency for Food, Environmental and Occupational Health and Safety), Maisons-Alfort, France.ORCID 0000-0002-9396-6327
Sabine DelannoyLaboratory for Food Safety, Unit of "Pathogenic E. coli" (COLiPATH) and Genomics platform "IdentyPath" (IDPA), Anses (The French Agency for Food, Environmental and Occupational Health and Safety), Maisons-Alfort, France.ORCID 0000-0002-9208-5659

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In January 2025, Santé publique France detected several cases of hemolytic uremic syndrome (HUS) in adults caused by a rare serotype of Shiga toxin-producing

Indexed as

Escherichia coli InfectionsHemolytic-Uremic SyndromePhylogenyShiga-Toxigenic Escherichia coliAnimalsCheeseDisease OutbreaksEscherichia coli ProteinsFranceHumansSerogroupVirulence FactorsEscherichia coli ProteinsVirulence Factorsenterohemorrhagic E. coli EHECIncFIA/FIB plasmidO77g:H18putative enterotoxinShiga toxin-producing E. coli STECstx2d

Identifiers

PMID42029118
PMCPMC13188871

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.