Evidence map›Paper›PMID 42027778›Full record

ReviewFrontiers in artificial intelligence2026

The transformative impact of AI-enabled AlphaFold 3: evolution, current status, and future prospects in structural biology.

Chiranjib Chakraborty, Manojit Bhattacharya, Sang-Soo Lee

Abstract readReview
In one paragraph

Review in Frontiers in artificial intelligence, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Review
  3. Frontiers in bioinformatics · 2026
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Chiranjib ChakrabortyDepartment of Biotechnology, School of Life Science and Biotechnology, Adamas University, Kolkata, India.
Manojit BhattacharyaDepartment of Zoology, Fakir Mohan University, Balasore, India.
Sang-Soo LeeInstitute for Skeletal Aging & Orthopedic Surgery, Hallym University-Chuncheon Sacred Heart Hospital, Chuncheon-si, Republic of Korea.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The AlphaFold (AF) initiative profoundly impacted structural biology, evidenced by its 2024 Nobel Prize. AlphaFold progressed from AF1 to AF2, which achieved near-experimental accuracy in single-chain protein folding, and then to AF3, expanding predictions to protein-ligand, protein-nucleic acid, and protein-protein complexes. This evolution led to the widespread adoption of AF tools, expanded structural coverage, and greater accessibility through the AlphaFold Database (AFDB), accelerating translational research, especially in structure-based drug discovery (SBDD) and the study of complex macromolecular assemblies. AF1 uses deep neural networks (DNNs), AF2 employs the Evoformer to model evolutionarily related sequences, and AF3 applies the Pairformer for pairwise amino acid interactions. The main differences between AF versions are architectural. Remaining challenges include predicting protein dynamics and multiple conformational states. This review first outlines AlphaFold's architectural evolution, then explores the post-AlphaFold landscape and its global impact, discusses translational research applications, and addresses limitations and future directions. Despite challenges, AlphaFold is poised to further advance structural biology, particularly in biotechnology and medicine.

Indexed as

AlphaFoldCASPprotein structure predictionrevolution in applicationstructural biology

Identifiers

PMID42027778
PMCPMC13099841

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.