ArticleScientific data2026
Three Near telomere-to-telomere Genomes for Gardenia jasminoides.
Article in Scientific data, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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12 authors.
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Abstract
Gardenia jasminoides, an evergreen shrub in the Rubiaceae family, is widely cultivated across southern China, particularly in regions south of the Yangtze River. With a long history of use in traditional Chinese medicine, its fruits and flowers are valued for their rich diversity of bioactive compounds. In this study, Oxford Nanopore (ONT) sequencing produced 37-34 Gb of long-read data (60-66× coverage) per accession. Complementary PacBio HiFi sequencing generated 28-32 Gb (50-58× coverage), while Hi-C sequencing provided 61-67 Gb (108-119× coverage) to support chromosome-scale assembly. To ensure accuracy, contigs were polished through multiple iterations using Medaka (ONT-based) and Racon (HiFi-based). The final assemblies resolved all 11 chromosomes at telomere-to-telomere continuity, with no gaps. Functional annotation assigned roles to more than 94% of predicted genes (34,397-34,440) through homology and domain-based searches. This high-quality genome resource enables the study of structural variation underlying agronomic traits and supports advances in molecular breeding, bioactive compound biosynthesis, and comparative genomics in Gardenia.
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