Evidence map›Paper›PMID 42026082›Full record

ArticleScientific data2026

Seasonality of composition, genomic potential and activity of coniferous forest soil microbiomes.

Zander Rainier Human, Martina Štursová, Iñaki Odriozola, Tomáš Větrovský, Adina Howe, Diana Navrátilová, Rubén López-Mondéjar, Lucia Žifčáková, Vendula Brabcová, Sunil Mundra and 17 more

Abstract readDataset
In one paragraph

Article in Scientific data, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors.

Zander Rainier Human *Laboratory of Environmental Microbiology, Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, Praha, 14200, Czech Republic. zander.human@gmail.com.ORCID http://orcid.org/0000-0003-3289-6860
Martina Štursová *Laboratory of Environmental Microbiology, Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, Praha, 14200, Czech Republic.ORCID http://orcid.org/0000-0003-1387-6426
Iñaki OdriozolaLaboratory of Environmental Microbiology, Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, Praha, 14200, Czech Republic.
Tomáš VětrovskýLaboratory of Environmental Microbiology, Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, Praha, 14200, Czech Republic.
Adina HoweDepartment of Agricultural and Biosystems Engineering, Iowa State University, Ames, IA, USA.
Diana NavrátilováLaboratory of Environmental Microbiology, Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, Praha, 14200, Czech Republic.
Rubén López-MondéjarLaboratory of Environmental Microbiology, Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, Praha, 14200, Czech Republic.
Lucia ŽifčákováLaboratory of Environmental Microbiology, Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, Praha, 14200, Czech Republic.
Vendula BrabcováLaboratory of Environmental Microbiology, Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, Praha, 14200, Czech Republic.
Sunil MundraDepartment of Biology, College of Science, United Arab Emirates University, Al-Ain, Abu Dhabi, UAE.
Ella ThoenSection for Genetics and Evolutionary Biology (EvoGene), Department of Biosciences, University of Oslo, Oslo, Norway.
Luis MorgadoSection for Genetics and Evolutionary Biology (EvoGene), Department of Biosciences, University of Oslo, Oslo, Norway.
Anna Maria Fiore-DonnoTerrestrial Ecology Group, Institute of Zoology, University of Cologne, Cologne, Germany.ORCID http://orcid.org/0000-0001-6265-1907
Michael BonkowskiTerrestrial Ecology Group, Institute of Zoology, University of Cologne, Cologne, Germany.ORCID http://orcid.org/0000-0003-2656-1183
Bartosz AdamczykNatural Resources Institute Finland (Luke), Latokartanonkaari 9, Helsinki, FI, 00790, Finland.
Petr KohoutLaboratory of Environmental Microbiology, Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, Praha, 14200, Czech Republic.
Mary S LiptonEnvironmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, 99352, United States of America.
Sara CalhounDepartment of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID http://orcid.org/0000-0003-2942-1338
Kurt LaButtiDepartment of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID http://orcid.org/0000-0002-5838-1972
Anna LipzenDepartment of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Keykhosrow KeymaneshDepartment of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Sravanthi TejomurthulaDepartment of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Christa PennacchioDepartment of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID http://orcid.org/0000-0002-0297-3960
Igor V GrigorievDepartment of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID http://orcid.org/0000-0002-3136-8903
Francis MartinUniversité de Lorraine, INRAE, UMR Interactions Arbres/Micro-organismes, Centre INRAE Grand-Est Nancy, 54280, Champenoux, France.
Håvard KauserudSection for Genetics and Evolutionary Biology (EvoGene), Department of Biosciences, University of Oslo, Oslo, Norway.
Petr BaldrianLaboratory of Environmental Microbiology, Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, Praha, 14200, Czech Republic. baldrian@biomed.cas.cz.ORCID http://orcid.org/0000-0002-8983-2721

Funding

Norges Forskningsråd (Research Council of Norway) 240859
6 · The paper itself

Abstract

Coniferous forest soils represent a globally important carbon sink, where the microbiome is essential for carbon flux between tree roots, rhizosphere, litter and soil. Soil habitats, such as roots, rhizosphere, bulk soil and litter differ in physicochemical properties and composition of highly specialized microbial communities, whose activity reflects the seasonality of temperature and tree activity of these mid- to high-latitude biomes. Here we present a multi-omic dataset encompassing 160 samples collected from four coniferous forest soil habitats in the Czech Republic and Norway, sampled in early summer, late summer, early winter and late winter that characterize the composition, genomic potential and activity of tree roots and microbiome. For each sample, we provide metabarcoding-based composition of bacterial, fungal and eukaryotic communities, results of shotgun DNA sequencing (metagenomes) and shotgun RNA sequencing (metatranscriptomes) illustrating the functional potential and activity within habitats. This dataset enables analyses of the temporal variation of taxonomic composition, functional potential and transcription across seasons in a temperate and boreal coniferous forest.

Indexed as

ForestsMicrobiotaSeasonsSoil MicrobiologyTracheophytaCzech RepublicPlant Roots

Identifiers

PMID42026082
PMCPMC13315874

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.