Evidence map›Paper›PMID 42025708›Full record

ArticleClinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association2026

A Randomized Trial of Rifaximin vs Low Fermentable Oligosaccharides, Disaccharides, Monosaccharides, and Polyols Diet for Symptom Outcomes and Microbiome Changes in Irritable Bowel Syndrome.

Allen A Lee, Krishna Rao, Prashant Singh, Jared Fehlman, Jun Gao, Will Takakura, Amanda Lynett, Emily Haller, Sarah Ball, Alicia Marand and 11 more

Registry-linked trialAbstract read
In one paragraph

Article in Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT03219528 (A Longitudinal Study to Identify IBS Phenotypes Using Fecal Microbiota and Hydrogen Breath Testing), which is not on this map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03219528 phase4completednot on this map

A Longitudinal Study to Identify IBS Phenotypes Using Fecal Microbiota and Hydrogen Breath Testing

TypeinterventionalSponsorUniversity of MichiganRan2018 to 2024Enrolled74ConditionsIrritable Bowel SyndromeArmsRifaximin 550 MG, Low FODMAP Diet
3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Allen A LeeDivision of Gastroenterology, Department of Internal Medicine, University of Michigan, Ann Arbor, Michigan. Electronic address: allenlee@med.umich.edu.
Krishna RaoDivision of Infectious Diseases, Department of Internal Medicine, University of Michigan, University of Michigan, Ann Arbor, Michigan.
Prashant SinghDivision of Gastroenterology, Department of Internal Medicine, University of Michigan, Ann Arbor, Michigan.
Jared FehlmanDivision of Gastroenterology, Department of Internal Medicine, University of Michigan, Ann Arbor, Michigan; Department of Internal Medicine, Huntington Health-An Affiliate of Cedars-Sinai, Pasadena, California.
Jun GaoDivision of Gastroenterology, Department of Internal Medicine, University of Michigan, Ann Arbor, Michigan.
Will TakakuraDivision of Gastroenterology, Department of Internal Medicine, University of Michigan, Ann Arbor, Michigan; Division of Gastroenterology and Hepatology, Kaiser Permanente, Panorama City, California.
Amanda LynettDivision of Gastroenterology, Department of Internal Medicine, University of Michigan, Ann Arbor, Michigan.
Emily HallerDivision of Gastroenterology, Department of Internal Medicine, University of Michigan, Ann Arbor, Michigan; Department of Lifestyle Medicine, Trinity Health Ann Arbor, Ypsilanti, Michigan.
Sarah BallDepartment of Nutritional Sciences, School of Public Health, University of Michigan, Ann Arbor, Michigan.
Alicia MarandDepartment of Nutritional Sciences, School of Public Health, University of Michigan, Ann Arbor, Michigan.
Amy LiuDivision of Gastroenterology, Department of Internal Medicine, University of Michigan, Ann Arbor, Michigan.
Eric ShahDivision of Gastroenterology, Department of Internal Medicine, University of Michigan, Ann Arbor, Michigan.
Stacy MeneesDivision of Gastroenterology, Department of Internal Medicine, University of Michigan, Ann Arbor, Michigan.
Raani PungliaDivision of Gastroenterology, Department of Internal Medicine, University of Michigan, Ann Arbor, Michigan.
Borko NojkovDivision of Gastroenterology, Department of Internal Medicine, University of Michigan, Ann Arbor, Michigan.
Shanti EswaranDivision of Gastroenterology, Department of Internal Medicine, University of Michigan, Ann Arbor, Michigan.
Jason BakerDivision of Gastroenterology, Department of Internal Medicine, University of Michigan, Ann Arbor, Michigan.
William D CheyDivision of Gastroenterology, Department of Internal Medicine, University of Michigan, Ann Arbor, Michigan.
Chung OwyangDivision of Gastroenterology, Department of Internal Medicine, University of Michigan, Ann Arbor, Michigan.
Vincent YoungDivision of Infectious Diseases, Department of Internal Medicine, University of Michigan, University of Michigan, Ann Arbor, Michigan; Department of Microbiology and Immunology, University of Michigan, Ann Arbor, Michigan.
William L HaslerDivision of Gastroenterology, Department of Internal Medicine, University of Michigan, Ann Arbor, Michigan; Division of Gastroenterology and Hepatology, Department of Internal Medicine, Mayo Clinic Arizona, Scottsdale, Arizona.

Funding

Pilot and Feasibility (P and F) ProgramP30DK089503 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI RANDY J SEELEY · 2010 to 2026
$20.3M
Institutional Career Development CoreKL2TR002241 · NCATS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ELLINGROD, VICKI L · 2017 to 2021
$6.9M
A Systems Biology Approach Using Fecal Microbiota and Metabolomics to Identify Novel Subtypes in Irritable Bowel Syndrome.K23DK124567 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LEE, ALLEN A · 2021 to 2023
$729k
The role of sulfidogenic microbes in quiescent Crohn’s disease with persistent symptomsR03DK139095 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LEE, ALLEN A · 2024 to 2025
$234k
AHRQ HHS R01 HS027431NCATS NIH HHS KL2 TR002241NIDDK NIH HHS K23 DK124567NIDDK NIH HHS P30 DK089503NIDDK NIH HHS R03 DK139095
6 · The paper itself

Abstract

BACKGROUND &

aimsThe low Fermentable Oligosaccharides, Disaccharides, Monosaccharides, And Polyols (FODMAP) diet (LFD) and rifaximin are effective in <50% individuals with irritable bowel syndrome (IBS), highlighting the need to identify predictors of treatment response. We therefore conducted a randomized controlled trial comparing LFD and rifaximin to identify microbial predictors of response.

methodsSixty-five adults with diarrhea-predominant IBS (IBS-D) were randomized to LFD or rifaximin for 5 weeks. Primary endpoints were changes in mean daily abdominal pain and bloating at week 5 vs baseline. Secondary endpoints included changes in IBS Symptom Severity Score and Bristol Stool Form Scale at week 5 vs baseline. Exploratory endpoints included responders defined as ≥30% reduction in abdominal pain or bloating. Stool samples collected at weeks 0, 2, 4, and 5 underwent 16S rRNA sequencing, and glucose breath testing (BT) was performed at weeks 0 and 5.

resultsBoth LFD and rifaximin significantly improved abdominal pain (-0.29 with LFD vs -0.24 points/week with rifaximin); bloating (-0.29 vs -0.19 per week); and IBS Symptom Severity Score (-14.2 vs -13.3 per week) at week 5 (all P < .0001), with no significant change in Bristol Stool Form Scale. BT results were inconsistent predictors of response, with positive baseline hydrogen BT associated with lower odds of rifaximin response, and methane conversion at week 5 showed discordant associations with rifaximin response. In contrast, distinct baseline taxa were associated with treatment response. LFD responders had lower abundance of putative saccharolytic taxa (Butyricimonas, Bacteroides, Intestinibacter), whereas rifaximin responders were enriched in taxa with putative short-chain fatty acid-producing and bile acid-modifying potential (Ruminococcus, Coprococcus, Odoribacter). Nonresponders exhibited enrichment of putative proteolytic taxa (Bilophila, Alistipes, Prevotella).

conclusionsLFD and rifaximin are equally effective for IBS-D, with distinct microbial predictors of response. However, these findings require validation before informing personalized treatment approaches. CLINICALTRIALS: gov, Number: NCT03219528.

Indexed as

MicrobiomePrecision MedicineSmall Intestinal Bacterial Overgrowth

Identifiers

PMID42025708
PMCPMC13358627

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.