Evidence map›Paper›PMID 42017305›Full record

ArticleJournal of experimental botany2026

Chimeras of GROWTH-REGULATING FACTOR and GRF-INTERACTING FACTOR enhance leaf-based regeneration and transformation efficiency in tomato.

Sanghee Lee, Ah-Hyeon Choi, Minah Jung, Hualin Nie, Seo-Rin Ko, Nayoung Kim, Suk-Yoon Kwon, Ah-Young Shin

Abstract read
In one paragraph

Article in Journal of experimental botany, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Sanghee LeePlant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon 34141, Republic of Korea.
Ah-Hyeon ChoiPlant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon 34141, Republic of Korea.
Minah JungPlant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon 34141, Republic of Korea.
Hualin NiePlant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon 34141, Republic of Korea.
Seo-Rin KoPlant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon 34141, Republic of Korea.ORCID 0009-0004-9539-7238
Nayoung KimPlant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon 34141, Republic of Korea.
Suk-Yoon KwonPlant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon 34141, Republic of Korea.ORCID 0000-0002-5787-4898
Ah-Young ShinPlant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon 34141, Republic of Korea.ORCID 0000-0003-4389-1846

Funding

Korea government 2023R1A2C1006404Korea government RS-2024-00400556Korea government RS-2024-00440009Korea Research Institute of Bioscience and BiotechnologyNational Research Foundation of KoreaResearch Initiative Program KGM1002622Research Initiative Program KGM9942623
6 · The paper itself

Abstract

Efficient regeneration remains a major constraint for tomato (Solanum lycopersicum) transformation, particularly from leaf explants. Here, we evaluated chimeric GROWTH-REGULATING FACTOR (GRF)-GRF-INTERACTING FACTOR (GIF) proteins as regeneration enhancers and examined regulatory features underlying their activity. Fusion constructs based on Arabidopsis thaliana GRF5-GIF1 and their tomato homologs SlGRF4 and SlGIF1b markedly increased shoot regeneration from leaf explants, with similar enhancement observed in cotyledon-derived tissues, across three tomato cultivars. Regenerated shoots were able to form roots, indicating that GRF-GIF-mediated regeneration produced developmentally competent plantlets. Temporal expression profiling indicated that GRF-GIF transcript levels increased during regeneration and coincided with the induction of cytokinin- and auxin-associated regulators linked to meristem initiation. RNA-seq analyses revealed a shared early transcriptional program enriched for transcription factor activity and protein homeostasis, accompanied by broad repression of metabolism-related pathways. Despite strong phenotypic effects, GRF-GIF fusion proteins accumulated poorly in stable transformants. Transient expression assays suggested that their abundance is influenced by the ubiquitin-proteasome system, and mutational analyses identified lysine residues affecting protein stability, although stabilization did not further enhance regeneration. Together, these findings support the use of GRF-GIF chimeras as effective enhancers of tomato regeneration from leaf explants and highlight the contribution of coordinated regulation at the transcript and protein levels to their functional window during cellular reprogramming.

Indexed as

Plant LeavesPlant ProteinsRegenerationSolanum lycopersicumGene Expression Regulation, PlantPlants, Genetically ModifiedPlant ProteinsGRF–GIF chimeraRNA stabilitytomato regenerationtranscriptome profilingubiquitin–proteasome system

Identifiers

PMID42017305
PMCPMC13415958

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.