Evidence map›Paper›PMID 42015958›Full record

ArticleEvolutionary applications2026

Epigenetics in Captivity: Restoring Wild Phenotypes in Captive-Reared Salmonids.

Tia Attfield, Andrew Honsey, Amanda Ackiss, Andreas Luek, Brian Meagher, Hayley Nuetzel, Ilana Koch, Julien April, Kristy Wakeling, Kyle W Wellband and 6 more

Abstract read
In one paragraph

Article in Evolutionary applications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Tia AttfieldDepartment of Biological Sciences University of Alberta Edmonton Alberta Canada.ORCID https://orcid.org/0009-0001-8578-0127
Andrew HonseyU.S. Geological Survey Great Lakes Science Center Ann Arbor Michigan USA.ORCID https://orcid.org/0000-0001-7535-1321
Amanda AckissU.S. Geological Survey Great Lakes Science Center Ann Arbor Michigan USA.
Andreas LuekAlberta Environment & Protected Areas Edmonton Alberta Canada.
Brian MeagherAlberta Environment & Protected Areas Edmonton Alberta Canada.
Hayley NuetzelColumbia River Inter-Tribal Fish Commission Portland Oregon USA.
Ilana KochColumbia River Inter-Tribal Fish Commission Portland Oregon USA.
Julien AprilMinistère de l'Environnement, de la Lutte Contre les Changements Climatiques, de la Faune et des Parcs Québec City Quebec Canada.
Kristy WakelingAlberta Forestry & Parks Edmonton Alberta Canada.
Kyle W WellbandFisheries and Oceans Canada Pacific Sciences Enterprise Centre West Vancouver British Columbia Canada.
Raphaël BouchardUniversité Laval Québec City Quebec Canada.ORCID https://orcid.org/0000-0002-8156-0274
Sarah J LehnertFisheries and Oceans Canada Newfoundland and Labrador Branch St. John's Newfoundland and Labrador Canada.ORCID https://orcid.org/0000-0002-3569-8299
Shawn NarumColumbia River Inter-Tribal Fish Commission Portland Oregon USA.ORCID https://orcid.org/0000-0002-7470-7485
Timothy M HealyFisheries and Oceans Canada Pacific Biological Station Nanaimo British Columbia Canada.
Trevor E PitcherGreat Lakes Institute for Environmental Research University of Windsor Windsor Ontario Canada.
Clare J VenneyDepartment of Biological Sciences University of Alberta Edmonton Alberta Canada.ORCID https://orcid.org/0000-0002-8058-9489

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Captive rearing is a common practice for the stocking, conservation, and supplementation of fish species worldwide, but captive-reared fish can exhibit altered phenotypes leading to reduced fitness in nature compared to wild conspecifics. In salmonids, certain studies have found limited genetic differentiation between wild and captive-reared fish. However, documented changes in gene expression in hatchery fish have led scientists to investigate epigenetic mechanisms, such as DNA methylation, as a source of these differences. In this binational collaborative piece, we synthesize the knowledge and efforts of academics and government scientists to highlight how interactions between captive rearing and the epigenome elicit parallel phenotypic changes across salmonid species. We examine the known and potential links between DNA methylation and the phenotypic effects of captive rearing including changes in behavior, color, gut microbiomes, and developmental abnormalities. We review efforts to minimize these phenotypic and epigenetic effects including attempts to modify the hatchery environment and rearing protocols. We provide a framework to integrate epigenetic considerations into hatchery rearing protocols by weighing the heritable nature of DNA methylation with the goals of different captive rearing programs and explore whether minimizing the phenotypic and epigenetic effects of captive rearing is worthwhile. We examine heritability and persistence of epigenetic effects, and we propose the exploitation of heritable bet-hedging as an epigenetic buffer to increase post-release survival. We also suggest novel applications of epigenomic biomarkers as a non-lethal method for post-release monitoring. Ultimately, collaborative multi-disciplinary research across species is needed to understand the comprehensive effects of captive rearing, reduce the ecological impacts of captive fish in the wild, and increase population resilience. Integrating epigenetics into fish hatchery management will provide new opportunities for optimizing and improving captive rearing.

Indexed as

conservation ecologyDNA methylationhatchery managementphenotypesalmonidssupplementation

Identifiers

PMID42015958
PMCPMC13093851

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.