Evidence map›Paper›PMID 42014719›Full record

ArticleNature communications2026

Cell fate specification during respiratory development requires ARID1A-containing canonical BAF complex activity.

Hyunwook Lee, Abigail Jaquish, Sharlene Fernandes, Barbara Zhao, Amber Elitz, Kathleen Cook, Sarah Trovillion, Natalia Bottasso-Arias, Simon J Y Han, Samantha Goodwin and 9 more

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors.

Hyunwook Lee *Perinatal Institute, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.ORCID http://orcid.org/0000-0001-9620-4953
Abigail Jaquish *Department of Cell and Development Biology, University of California San Diego, San Diego, CA, USA.ORCID http://orcid.org/0000-0003-2250-1028
Sharlene FernandesPerinatal Institute, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Barbara ZhaoPerinatal Institute, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Amber ElitzPerinatal Institute, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Kathleen CookPerinatal Institute, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.ORCID http://orcid.org/0009-0007-0850-9353
Sarah TrovillionPerinatal Institute, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Natalia Bottasso-AriasPerinatal Institute, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Simon J Y HanDivision of Developmental Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.ORCID http://orcid.org/0000-0001-8039-510X
Samantha GoodwinPerinatal Institute, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Nicholas X RussellPerinatal Institute, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Gerald SaundersPerinatal Institute, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.ORCID http://orcid.org/0009-0007-1043-1065
Amanda L ZachariasPerinatal Institute, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.ORCID http://orcid.org/0000-0002-4818-916X
Samantha A BrugmannDivision of Developmental Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.ORCID http://orcid.org/0000-0002-6860-6450
Jeffrey A WhitsettPerinatal Institute, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.ORCID http://orcid.org/0000-0003-1668-5174
Debora SinnerPerinatal Institute, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.ORCID http://orcid.org/0000-0002-0704-5223
Xin SunDepartment of Cell and Development Biology, University of California San Diego, San Diego, CA, USA.
Daniel T SwarrPerinatal Institute, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.ORCID http://orcid.org/0000-0002-7305-0442
William J ZachariasPerinatal Institute, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA. William.Zacharias@cchmc.org.ORCID http://orcid.org/0000-0002-2643-0610

Funding

Defining PRC2 complex epigenomic control in alveolar progenitor cellsR01HL166245 · NHLBI · CINCINNATI CHILDRENS HOSP MED CTR · PI William John Zacharias · 2023 to 2026
$2.3M
Epigenetic Regulation of the Maturation and Function of Lung Epithelium by the SWI/SNF Proteins ARID1A and ARID1B.R01HL156860 · NHLBI · CINCINNATI CHILDRENS HOSP MED CTR · PI SINNER, DEBORA, ZACHARIAS, WILLIAM JOHN · 2021 to 2025
$1.9M
NHLBI NIH HHS R01 HL156860NHLBI NIH HHS R01 HL166245U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) HL156860U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) HL166245U.S. Department of Health & Human Services | NIH | National Institute of Allergy and Infectious Diseases (NIAID) AI150748
6 · The paper itself

Abstract

Mammalian lung development requires coordinated gene regulation to drive lung bud formation, branching morphogenesis, proximal-distal patterning, and epithelial specification. While key transcriptional and signaling regulators are known, the epigenetic regulators are less well studied. Here, we identify the canonical BAF complex as essential for lung epithelial development. Complete loss of BAF complex function causes failure of lung formation, and selective deletion of ARID1A leads to loss of distal patterning and reduced alveolar type 1 (AT1) cell differentiation, with emergence of a highly proliferative cell state defined by joint activation of YAP and WNT signaling and loss of BMP response. Epigenomic analyses demonstrate broad failure of cell type-specific enhancer activation. Notably, exogenous BMP4 rescues distal differentiation in embryonic murine lung organoids, while YAP and WNT signaling require functional BAF complex. These data demonstrate a requirement for BAF complex activity during lung epithelial development and reveal a surprising differential specificity between signaling pathways.

Indexed as

DNA-Binding ProteinsLungNuclear ProteinsTranscription FactorsAdaptor Proteins, Signal TransducingAnimalsBone Morphogenetic Protein 4Cell Cycle ProteinsCell DifferentiationGene Expression Regulation, DevelopmentalMiceMice, KnockoutPhosphoproteinsWnt Signaling PathwayYAP-Signaling ProteinsAdaptor Proteins, Signal TransducingArid1a protein, mouseBmp4 protein, mouseBone Morphogenetic Protein 4Cell Cycle ProteinsDNA-Binding ProteinsNuclear ProteinsPhosphoproteinsTranscription FactorsYap1 protein, mouseYAP-Signaling Proteins

Identifiers

PMID42014719
PMCPMC13284238

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.