Evidence map›Paper›PMID 42014411›Full record

ArticleNPJ systems biology and applications2026

Modeling epithelial deformation and cell rearrangement in response to external forces during Zebrafish epiboly.

Sharon B Minsuk, T J Sego, David M Umulis, Mary C Mullins, James A Glazier

Abstract read
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Article in NPJ systems biology and applications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Sharon B MinsukDepartment of Intelligent Systems Engineering and Biocomplexity Institute, Indiana University, Bloomington, IN, USA. sharon@sharonminsuk.com.
T J SegoDepartment of Medicine, University of Florida, Gainesville, FL, USA.
David M UmulisWeldon School of Biomedical Engineering, Purdue University, West Lafayette, IN, USA.
Mary C MullinsDepartment of Cell and Developmental Biology, University of Pennsylvania School of Medicine, Philadelphia, PA, USA.
James A GlazierDepartment of Intelligent Systems Engineering and Biocomplexity Institute, Indiana University, Bloomington, IN, USA.

Funding

Dissemination of libRoadRunner and CompuCell3DU24EB028887 · NIBIB · UNIVERSITY OF WASHINGTON · PI GLAZIER, JAMES ALEXANDER, SAURO, HERBERT M. · 2019 to 2023
$1.5M
NIH HHS U24 EB028887NSF 2000281NSF 2120200
6 · The paper itself

Abstract

Morphogenesis in early development involves complex and extreme deformations in response to intra- and intercellular forces. Zebrafish epiboly, the spreading of the blastoderm to cover and engulf the large yolk cell, is a key early event that sets the stage for the establishment of the body plan, but the way the forces driving expansion are generated and mediated is poorly understood. The enveloping layer (EVL), the thin squamous outer epithelium of the blastoderm, plays a central role. Forces generated in the yolk cell are transmitted through tight junctions to the marginal EVL cells, and then propagate through the rest of the EVL. To understand mechanisms of force generation and transduction during epiboly, we first need a mechanical model of the EVL capable of responding to such forces and undergoing the drastic deformation of epiboly. The expanding EVL more than doubles its surface area and experiences significant shear as it deforms from a thin cap at one pole to become a complete sphere, necessarily requiring extensive internal rearrangement. We constructed an agent-based model of the EVL and its response to exogenous forces using the center-based simulation framework, Tissue Forge. Our model captures the large viscoelastoplastic deformation of the EVL by cell rearrangement, and accommodates the required cell neighbor exchanges without losing mechanical integration. Features observed in living embryos, such as the straightening of the initially ragged leading edge, also emerge in the model. We identified two key components required for realistic epiboly in the model: first, a mechanism to enable tissue remodeling by cell rearrangement without tearing the tissue, and second, a negative feedback on the forces driving EVL expansion, to regulate and synchronize the advancement of the EVL margin. We discuss the implications of these findings for the behavior of living EVL and the mechanisms that drive epiboly.

Indexed as

Models, BiologicalZebrafishAnimalsBiomechanical PhenomenaBlastodermComputer SimulationEmbryo, NonmammalianEpithelial CellsMorphogenesis

Identifiers

PMID42014411
PMCPMC13139408

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.