Evidence map›Paper›PMID 42011725›Full record

ArticleActa crystallographica. Section D, Structural biology2026

Mapping the effects of specific radiation damage and solvent radiolysis in buffers and crystals with online UV-Vis absorption spectroscopy.

Jack Stubbs, Nicolas Caramello, Matthew J Rodrigues, Sylvain Engilberge, Eric Mathieu, Samuel L Rose, Gwyndaf Evans, Antoine Royant, Ivo Tews

Abstract read
In one paragraph

Article in Acta crystallographica. Section D, Structural biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Jack StubbsSchool of Biological Sciences and Institute for Life Sciences, Faculty of Environmental and Life Sciences, University of Southampton, Southampton SO17 1BJ, United Kingdom.ORCID 0000-0002-3788-1687
Nicolas CaramelloEuropean Synchrotron Radiation Facility (ESRF), 71 Avenue des Martyrs, CS 40220, 38043 Grenoble CEDEX 9, France.ORCID 0000-0003-0025-0213
Matthew J RodriguesSchool of Biological Sciences and Institute for Life Sciences, Faculty of Environmental and Life Sciences, University of Southampton, Southampton SO17 1BJ, United Kingdom.ORCID 0000-0003-1243-903X
Sylvain EngilbergeUniversité Grenoble Alpes, CNRS, CEA, Institut de Biologie Structurale (IBS), 71 Avenue des Martyrs, CS 10090, 38044 Grenoble CEDEX 9, France.ORCID 0000-0001-8680-6790
Eric MathieuUniversité Grenoble Alpes, CNRS, CEA, Institut de Biologie Structurale (IBS), 71 Avenue des Martyrs, CS 10090, 38044 Grenoble CEDEX 9, France.ORCID 0000-0001-8032-4790
Samuel L RoseEuropean Synchrotron Radiation Facility (ESRF), 71 Avenue des Martyrs, CS 40220, 38043 Grenoble CEDEX 9, France.ORCID 0000-0003-4824-4066
Gwyndaf EvansDiamond Light Source, Harwell Science and Innovation Campus, Didcot OX11 0DE, United Kingdom.ORCID 0000-0002-6079-2201
Antoine RoyantEuropean Synchrotron Radiation Facility (ESRF), 71 Avenue des Martyrs, CS 40220, 38043 Grenoble CEDEX 9, France.ORCID 0000-0002-1919-8649
Ivo TewsSchool of Biological Sciences and Institute for Life Sciences, Faculty of Environmental and Life Sciences, University of Southampton, Southampton SO17 1BJ, United Kingdom.ORCID 0000-0002-4704-1139

Funding

Agence Nationale de la Recherche ANR-21-ESRE-0011Biotechnology and Biological Sciences Research Council BB/T008768/1Biotechnology and Biological Sciences Research Council BB/Y009339/1French Infrastructure for Integrated Structural Biology ANR-10-INSB-05-02French Infrastructure for Integrated Structural Biology ANR-10-LABX-49-01Royal Society RSWF\R2\182017
6 · The paper itself

Abstract

Online UV-Vis absorption spectroscopy is often used during crystallographic data collection to characterize chromophores within proteins. This includes the study of electron-rich or redox-active enzyme intermediates and cofactors that are prone to specific radiation damage, necessitating suitable low-dose data-collection strategies. In crystallo spectroscopy enables the monitoring of X-ray-induced changes in the spectroscopic signatures of proteins and ligands; however, a comprehensive approach that also considers buffer components is required. Here, we present a mapping of X-ray-induced spectral changes in common crystallization chemicals and mixtures at cryogenic temperature, for which spectroscopic changes can be detected at doses as low as 1 kGy. A transient increase in absorption between 450 and 700 nm is frequently observed, arising from solvated electron absorption. Below 450 nm, several distinct absorption peaks were detected, for example for halides in buffers. In addition, Rayleigh scattering can lead to an increasing loss of photons from the optical path as the wavelength decreases, and thus to a significant elevation of the baseline at shorter wavelengths. In this study, we demonstrate the use of spectroscopic analyses to investigate the chromophoric enzyme intermediate I320 in vitamin B

Indexed as

SolventsBuffersCrystallizationCrystallography, X-RaySpectrophotometry, UltravioletBuffersSolventsradiolysisspecific radiation damageUV–Vis absorption spectroscopy

Identifiers

PMID42011725
PMCPMC13134000

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.