Evidence map›Paper›PMID 42007968›Full record

ArticleMicrobial genomics2026

Genome-based source attribution using a One Health

Antonia Chalka, Louise Crozier, Adriana Vallejo-Trujillo, Alison Low, Sean McAteer, Vesa Qarkaxhija, Kate Templeton, Sue C Tongue, Judith Evans, Geoff Foster and 28 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Microbial genomics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

38 authors.

Antonia ChalkaThe Roslin Institute and Royal (Dick) School of Veterinary Medicine, University of Edinburgh, Easter Bush Estate, Edinburgh, Scotland, EH25 9RG, UK.
Louise CrozierFood Standards Scotland, Pilgrim House, Aberdeen, Scotland AB11 5RL, UK.
Adriana Vallejo-TrujilloThe Roslin Institute and Royal (Dick) School of Veterinary Medicine, University of Edinburgh, Easter Bush Estate, Edinburgh, Scotland, EH25 9RG, UK.
Alison LowThe Roslin Institute and Royal (Dick) School of Veterinary Medicine, University of Edinburgh, Easter Bush Estate, Edinburgh, Scotland, EH25 9RG, UK.
Sean McAteerThe Roslin Institute and Royal (Dick) School of Veterinary Medicine, University of Edinburgh, Easter Bush Estate, Edinburgh, Scotland, EH25 9RG, UK.
Vesa QarkaxhijaThe Roslin Institute and Royal (Dick) School of Veterinary Medicine, University of Edinburgh, Easter Bush Estate, Edinburgh, Scotland, EH25 9RG, UK.
Kate TempletonThe New Royal Infirmary, NHS Lothian, Edinburgh, Scotland, EH1 3EG, UK.
Sue C TongueCentre for Epidemiology & Planetary Health, School of Veterinary Medicine & Biosciences, SRUC, Rural and Veterinary Innovation Centre (RAVIC) Plot 9, Inverness Campus, Inverness, IV2 5NA, UK.
Judith EvansCentre for Epidemiology & Planetary Health, School of Veterinary Medicine & Biosciences, SRUC, Rural and Veterinary Innovation Centre (RAVIC) Plot 9, Inverness Campus, Inverness, IV2 5NA, UK.
Geoff FosterSRUC Veterinary Services, School of Veterinary Medicine & Biosciences, SRUC (Scotland's Rural College), RAVIC Plot 9, Inverness Campus, Inverness, IV2 5NA, UK.
Catriona WebsterCentre for Epidemiology & Planetary Health, School of Veterinary Medicine & Biosciences, SRUC, Rural and Veterinary Innovation Centre (RAVIC) Plot 9, Inverness Campus, Inverness, IV2 5NA, UK.
Thomas EvansSchool of Infection and Immunity, Sir Graeme Davies Building, University of Glasgow, Glasgow, G12 8TA, UK.
Charis A MarwickDivision of Population Health & Genomics, School of Medicine, Ninewells Campus, University of Dundee, Dundee, Scotland, UK.
Ahmed RazaDivision of Population Health & Genomics, School of Medicine, Ninewells Campus, University of Dundee, Dundee, Scotland, UK.
Benjamin J ParcellDivision of Population Health & Genomics, School of Medicine, Ninewells Campus, University of Dundee, Dundee, Scotland, UK.
Matthew T G HoldenInfection and Global Health Division, School of Medicine, University of St Andrews, North Haugh, St Andrews, Scotland, KY16 9TF, UK.
Tom McNeillyMoredun Research Institute, Pentland Science Park, Bush Loan, Penicuik, Midlothian, Scotland, EH26 0PZ, UK.
Stephen FitzgeraldMoredun Research Institute, Pentland Science Park, Bush Loan, Penicuik, Midlothian, Scotland, EH26 0PZ, UK.
Mairi MitchellMoredun Research Institute, Pentland Science Park, Bush Loan, Penicuik, Midlothian, Scotland, EH26 0PZ, UK.
Nuno SilvaMoredun Research Institute, Pentland Science Park, Bush Loan, Penicuik, Midlothian, Scotland, EH26 0PZ, UK.
Emily Robertshaw-McFarlaneMoredun Research Institute, Pentland Science Park, Bush Loan, Penicuik, Midlothian, Scotland, EH26 0PZ, UK.
Scott HamiltonMoredun Research Institute, Pentland Science Park, Bush Loan, Penicuik, Midlothian, Scotland, EH26 0PZ, UK.
Beth WellsMoredun Research Institute, Pentland Science Park, Bush Loan, Penicuik, Midlothian, Scotland, EH26 0PZ, UK.
Clare HamiltonMoredun Research Institute, Pentland Science Park, Bush Loan, Penicuik, Midlothian, Scotland, EH26 0PZ, UK.
Eleanor WatsonMoredun Research Institute, Pentland Science Park, Bush Loan, Penicuik, Midlothian, Scotland, EH26 0PZ, UK.
David FinlayScottish Environment Protection Agency (SEPA), Strathallan House, The Castle Business Park, Stirling, Scotland, FK9 4TZ, UK.
Julie BollandScottish Environment Protection Agency (SEPA), Strathallan House, The Castle Business Park, Stirling, Scotland, FK9 4TZ, UK.
John RedshawScottish Environment Protection Agency (SEPA), Strathallan House, The Castle Business Park, Stirling, Scotland, FK9 4TZ, UK.
David WalkerCentre for Environment, Fisheries and Aquaculture Science (CEFAS), Barrack Road, The Nothe, Weymouth, Dorset, DT4 8UB, UK.
Jane HeywoodCentre for Environment, Fisheries and Aquaculture Science (CEFAS), Barrack Road, The Nothe, Weymouth, Dorset, DT4 8UB, UK.
Charlotte KingCentre for Environment, Fisheries and Aquaculture Science (CEFAS), Barrack Road, The Nothe, Weymouth, Dorset, DT4 8UB, UK.
Craig Baker-AustinCentre for Environment, Fisheries and Aquaculture Science (CEFAS), Barrack Road, The Nothe, Weymouth, Dorset, DT4 8UB, UK.
Athina PapadopoulouCentre for Environment, Fisheries and Aquaculture Science (CEFAS), Barrack Road, The Nothe, Weymouth, Dorset, DT4 8UB, UK.
Andy PowellCentre for Environment, Fisheries and Aquaculture Science (CEFAS), Barrack Road, The Nothe, Weymouth, Dorset, DT4 8UB, UK.
Genever MorganInstitute of Infection, Veterinary and Ecological Science, Leahurst Campus, University of Liverpool, Neston, CH64 7TE, UK.
Gavin K PatersonThe Roslin Institute and Royal (Dick) School of Veterinary Medicine, University of Edinburgh, Easter Bush Estate, Edinburgh, Scotland, EH25 9RG, UK.
Jacqui McElhineyFood Standards Scotland, Pilgrim House, Aberdeen, Scotland AB11 5RL, UK.
David L GallyThe Roslin Institute and Royal (Dick) School of Veterinary Medicine, University of Edinburgh, Easter Bush Estate, Edinburgh, Scotland, EH25 9RG, UK.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Random forest-based source attribution models were developed from a 'One Health' resource comprising 4,230 high-quality whole-genome assemblies from

Indexed as

Escherichia coliEscherichia coli InfectionsOne HealthAnimalsBacteremiaDogsFood MicrobiologyGenome, BacterialHumansScotlandUrinary Tract InfectionsWastewaterWater MicrobiologyWastewaterEscherichia colimachine learningOne Healthsource attributionwastewater

Identifiers

PMID42007968
PMCPMC13094829

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.