Evidence map›Paper›PMID 42005388›Full record

ArticlePatterns (New York, N.Y.)2026

Experimental and machine learning-based exploration of repurposed drugs reveals chemical features underlying phospholipidosis.

Maria Kuzikov, Adelinn Kalman, Reagon Karki, Jeanette Reinshagen, Johanna Huchting, Kun Qian, Hanna Axelsson, Marianna Tampere, Päivi Östling, Brinton Seashore-Ludlow and 3 more

Abstract read
In one paragraph

Article in Patterns (New York, N.Y.), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Maria KuzikovFraunhofer Institute for Translational Medicine and Pharmacology (ITMP), Schnackenburgallee 114, 22525 Hamburg, Germany.
Adelinn KalmanDepartment of Oncology-Pathology, Karolinska Institutet, Science for Life Laboratory, Solna, Sweden.
Reagon KarkiFraunhofer Institute for Translational Medicine and Pharmacology (ITMP), Schnackenburgallee 114, 22525 Hamburg, Germany.
Jeanette ReinshagenFraunhofer Institute for Translational Medicine and Pharmacology (ITMP), Schnackenburgallee 114, 22525 Hamburg, Germany.
Johanna HuchtingFraunhofer Institute for Translational Medicine and Pharmacology (ITMP), Schnackenburgallee 114, 22525 Hamburg, Germany.
Kun QianDepartment of Medical Biochemistry and Biophysics, Karolinska Institutet, Science for Life Laboratory, Solna, Sweden.
Hanna AxelssonDepartment of Medical Biochemistry and Biophysics, Karolinska Institutet, Science for Life Laboratory, Solna, Sweden.
Marianna TampereDepartment of Oncology-Pathology, Karolinska Institutet, Science for Life Laboratory, Solna, Sweden.
Päivi ÖstlingDepartment of Oncology-Pathology, Karolinska Institutet, Science for Life Laboratory, Solna, Sweden.
Brinton Seashore-LudlowDepartment of Oncology-Pathology, Karolinska Institutet, Science for Life Laboratory, Solna, Sweden.
Yojana GadiyaFraunhofer Institute for Translational Medicine and Pharmacology (ITMP), Schnackenburgallee 114, 22525 Hamburg, Germany.
Philip GribbonFraunhofer Institute for Translational Medicine and Pharmacology (ITMP), Schnackenburgallee 114, 22525 Hamburg, Germany.
Andrea ZalianiFraunhofer Institute for Translational Medicine and Pharmacology (ITMP), Schnackenburgallee 114, 22525 Hamburg, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phospholipidosis (PLD) is a cellular adverse effect caused by, among other things, cationic amphiphilic drugs. There is interest within pharma discovery to predict this phenomenon, as it can impact the outcome of phenotypic cellular screens and significantly delay drug development processes. The development of accurate and validated machine learning models for predicting drug-induced PLD across different cell lines and research centers could provide a valuable early application tool for the pharmaceutical industry, potentially accelerating drug discovery and reducing the risk of late-stage failures. We report here the assembly, curation, testing, and modeling of one of the largest datasets of repurposed drugs (5,000+) tested for PLD induction on different cell lines. A machine learning classification method was developed and validated to predict whether molecules are prone to induce PLD effects when applied in cell-based screens.

Indexed as

drug discoverydrug-induced PLDmachine learningphospholipidosisrepurposing

Identifiers

PMID42005388
PMCPMC13083723

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.