Evidence map›Paper›PMID 41999200›Full record

ArticleMicrobial biotechnology2026

Cryo-EM Structures of Alcohol Oxidase Isozymes Reveal Structural Determinants of Cofactor Variation and Enzymatic Activity in Ogataea methanolica.

Hao-Liang Cai, Atsuhiro Shimada, Tasuku Hamaguchi, Akira Mizoguchi, Koji Yonekura, Kyohei Tsuchiyama, Masaya Shimada, Akio Ebihara, Kazutoshi Tani, Tomoyuki Nakagawa

Abstract read
In one paragraph

Article in Microbial biotechnology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Hao-Liang CaiThe United Graduate School of Agricultural Sciences, Gifu University, Gifu, Japan.
Atsuhiro ShimadaThe United Graduate School of Agricultural Sciences, Gifu University, Gifu, Japan.
Tasuku HamaguchiRIKEN SPring-8 Center, Sayo, Hyogo, Japan.
Akira MizoguchiGraduate School of Medicine, Mie University, Tsu, Mie, Japan.
Koji YonekuraRIKEN SPring-8 Center, Sayo, Hyogo, Japan.ORCID https://orcid.org/0000-0001-5520-4391
Kyohei TsuchiyamaThe Graduate School of Natural Sciences and Technologies, Gifu University, Gifu, Japan.
Masaya ShimadaThe United Graduate School of Agricultural Sciences, Gifu University, Gifu, Japan.
Akio EbiharaThe United Graduate School of Agricultural Sciences, Gifu University, Gifu, Japan.
Kazutoshi TaniGraduate School of Medicine, Mie University, Tsu, Mie, Japan.ORCID https://orcid.org/0000-0003-4835-154X
Tomoyuki NakagawaThe United Graduate School of Agricultural Sciences, Gifu University, Gifu, Japan.

Funding

Center for Quantum and Information Life Sciences, University of TsukubaJapan Agency for Medical Research and Development JP21am0101118Japan Agency for Medical Research and Development JP22ama121006Japan Agency for Medical Research and Development JP25ama121004JST-Mirai Program2 JPMJMI23G2KAKENHI, Grant-in-Aid for Challenging Exploratory Research 18K19875
6 · The paper itself

Abstract

Ogataea methanolica is a methylotrophic yeast that can produce diverse recombinant proteins using methanol as the sole carbon and energy source. Unlike most yeast species, which possess a single alcohol oxidase, O. methanolica encodes two isoenzymes, Mod1p and Mod2p. This study examines the structural and functional differences between Mod1p and Mod2p homooctamers. Both enzymes were purified from MOD-disrupted strains and analysed using cryogenic electron microscopy, achieving resolutions of 1.9 and 2.7 Å for Mod1p and Mod2p, respectively. The two isozymes assemble as tetramers of dimers stabilized by extensive intersubunit interactions, largely mediated by protruding loop regions and C-terminal extensions. Despite overall structural similarities, Mod1p and Mod2p exhibit subtle differences in surface charge distribution and sequence composition within the FAD-binding domain. These variations correlate with distinct cofactor preferences, with Mod1p binding arabityl FAD and Mod2p binding canonical FAD. Thin-section electron microscopy further revealed that Mod1p and Mod2p form both homomeric and hybrid octamers that assemble into peroxisomal crystalloids essential for methanol metabolism. Collectively, our findings provide mechanistic insight into alcohol oxidase diversity in methylotrophic yeasts, advancing our understanding of methanol utilization and its applications in biotechnology.

Indexed as

Alcohol OxidoreductasesCoenzymesSaccharomycetalesCryoelectron MicroscopyFlavin-Adenine DinucleotideIsoenzymesMethanolModels, MolecularProtein BindingProtein ConformationProtein Multimerizationalcohol oxidaseAlcohol OxidoreductasesCoenzymesFlavin-Adenine DinucleotideIsoenzymesMethanol

Identifiers

PMID41999200
PMCPMC13091009

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.