Evidence map›Paper›PMID 41999115›Full record

SynthesisMolecular ecology2026

Integrated Reanalysis of Global Riverine Fish eDNA Datasets Shows Robustness and Congruence of Biodiversity Conclusions.

Yan Zhang, Heng Zhang, Hiroshi Akashi, Camille P Albouy, Kara J Andres, José Barquín, Jeanine Brantschen, Richard E Connon, Joseph M Craine, Deirdre Gleeson and 40 more

Abstract readMeta-Analysis
In one paragraph

Synthesis in Molecular ecology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

50 authors.

Yan ZhangState Key Laboratory of Water Pollution Control and Green Resource Recycling, School of the Environment, Nanjing University, Nanjing, China.
Heng ZhangDepartment of Aquatic Ecology, Eawag, Swiss Federal Institute of Aquatic Science and Technology, Dübendorf, Switzerland.ORCID https://orcid.org/0000-0002-3139-9566
Hiroshi AkashiDepartment of Natural Sciences, Faculty of Arts and Sciences, Komazawa University, Setagaya, Japan.
Camille P AlbouyEcosystems and Landscape Evolution, Institute of Terrestrial Ecosystems, Department of Environmental Systems Science, ETH Zürich, Zürich, Switzerland.
Kara J AndresDepartment of Ecology and Evolutionary Biology, Cornell University, Ithaca, New York, USA.ORCID https://orcid.org/0000-0003-4822-7047
José BarquínIHCantabria-Instituto de Hidráulica Ambiental de la Universidad de Cantabria, Santander, Spain.
Jeanine BrantschenCenter for Ocean Solution, Hopkins Marine Station, Monterey, California, USA.
Richard E ConnonSchool of Veterinary Medicine, University of California, Davis, Davis, California, USA.
Joseph M CraineJonah Ventures, 5485 Conestoga Ct STE 210, Boulder, Colorado, USA.
Deirdre GleesonUWA School of Agriculture and Environment, The University of Western Australia, Perth, Australia.
Alejandra Goldenberg-VilarIHCantabria-Instituto de Hidráulica Ambiental de la Universidad de Cantabria, Santander, Spain.ORCID https://orcid.org/0000-0002-6898-3555
Alexia M González-FerrerasIHCantabria-Instituto de Hidráulica Ambiental de la Universidad de Cantabria, Santander, Spain.ORCID https://orcid.org/0000-0002-1039-6737
Chelsea HatzenbuhlerSpecPro Sustainment and Environment, c/o Office of Research and Development, United States Environmental Protection Agency, Duluth, Minnesota, USA.
Kamil HupałoAquatic Ecosystem Research, Faculty of Biology, University of Duisburg-Essen, Essen, Germany.ORCID https://orcid.org/0000-0002-9979-1185
Josephine HydeBiodiversity and Conservation Science, Department of Biodiversity, Conservation and Attractions, Kensington, Australia.
Wataru IwasakiDepartment of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Chiba, Japan.ORCID https://orcid.org/0000-0002-9169-9245
Mark D JohnsonEngineering Research and Development Center, Champaign, Illinois, USA.ORCID https://orcid.org/0000-0002-0460-945X
Aron D KatzEngineering Research and Development Center, Champaign, Illinois, USA.
Vyacheslav V KuzovlevFaculty of Environmental Management and Ecology, Tver State Technical University, Tver, Russia.
Courtney E LarsonOffice of Research and Development, United States Environmental Protection Agency, Duluth, Minnesota, USA.
Laurène A LecaudeyAquaculture Department, SINTEF Ocean, Trondheim, Norway.
Florian LeeseAquatic Ecosystem Research, Faculty of Biology, University of Duisburg-Essen, Essen, Germany.
Matthieu LeraySmithsonian Tropical Research Institute, Balboa, Ancon, Republic of Panama.ORCID https://orcid.org/0000-0002-7327-1878
Feilong LiGuangdong Basic Research Center of Excellence for Ecological Security and Green Development, Guangdong Provincial Key Laboratory of Water Quality Improvement and Ecological Restoration for Watersheds, School of Ecology, Environment and Resources, Guangdong University of Technology, Guangzhou, China.ORCID https://orcid.org/0000-0002-1545-991X
Till-Hendrik MacherAquatic Ecosystem Research, Faculty of Biology, University of Duisburg-Essen, Essen, Germany.ORCID https://orcid.org/0000-0001-6164-9557
Quentin MauvisseauNatural History Museum, University of Oslo, Oslo, Norway.
María Morán-LuisIHCantabria-Instituto de Hidráulica Ambiental de la Universidad de Cantabria, Santander, Spain.
Georgia NesterTrace and Environmental DNA (TrEnD) Lab, School of Molecular and Life Sciences, Curtin University, Perth, Australia.ORCID https://orcid.org/0000-0001-9721-4512
Helio QuinteroSmithsonian Tropical Research Institute, Balboa, Ancon, Republic of Panama.
Tsilavina RavelomananaBiology of Aquatic Population Laboratory, Antananarivo University, Antananarivo, Madagascar.
Merin Reji ChackoEcosystems and Landscape Evolution, Institute of Terrestrial Ecosystems, Department of Environmental Systems Science, ETH Zürich, Zürich, Switzerland.
Mattia SaccòTrace and Environmental DNA (TrEnD) Lab, School of Molecular and Life Sciences, Curtin University, Perth, Australia.ORCID https://orcid.org/0000-0001-6535-764X
Naiara SalesSchool of Science, Engineering & Environment, University of Salford, Newton Building, Crescent, Salford, UK.
Tamara SchenekarDepartment of Biology, University of Graz, Graz, Austria.ORCID https://orcid.org/0000-0002-4079-8550
Martin SchlettererDepartment of Ecosystem Management, Climate and Biodiversity, Institute of Hydrobiology and Aquatic Ecosystem Management, BOKU University, Vienna, Austria.
Saskia SchmidtAquatic Ecosystem Research, Faculty of Biology, University of Duisburg-Essen, Essen, Germany.
Nicholas O SchulteJonah Ventures, 5485 Conestoga Ct STE 210, Boulder, Colorado, USA.
Robin SchützAquatic Ecosystem Research, Faculty of Biology, University of Duisburg-Essen, Essen, Germany.ORCID https://orcid.org/0000-0002-4349-6697
Jinelle H SperryEngineering Research and Development Center, Champaign, Illinois, USA.ORCID https://orcid.org/0000-0003-0929-1900
Emma R StevensUWA School of Agriculture and Environment, The University of Western Australia, Perth, Australia.
Sarah A StinsonSchool of Veterinary Medicine, University of California, Davis, Davis, California, USA.
Steven WeissDepartment of Biology, University of Graz, Graz, Austria.
Fei XiaDepartment of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Chiba, Japan.ORCID https://orcid.org/0000-0003-4696-5740
Hui ZhangCAS Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China.ORCID https://orcid.org/0000-0002-6597-8910
Song ZhangState Key Laboratory of Water Pollution Control and Green Resource Recycling, School of the Environment, Nanjing University, Nanjing, China.ORCID https://orcid.org/0009-0000-9423-1915
Wenjun ZhongState Key Laboratory of Water Pollution Control and Green Resource Recycling, School of the Environment, Nanjing University, Nanjing, China.ORCID https://orcid.org/0000-0003-3583-6695
Shuo ZongEcosystems and Landscape Evolution, Institute of Terrestrial Ecosystems, Department of Environmental Systems Science, ETH Zürich, Zürich, Switzerland.
Loïc PellissierEcosystems and Landscape Evolution, Institute of Terrestrial Ecosystems, Department of Environmental Systems Science, ETH Zürich, Zürich, Switzerland.
Xiaowei ZhangState Key Laboratory of Water Pollution Control and Green Resource Recycling, School of the Environment, Nanjing University, Nanjing, China.ORCID https://orcid.org/0000-0001-8974-9963
Florian AltermattDepartment of Aquatic Ecology, Eawag, Swiss Federal Institute of Aquatic Science and Technology, Dübendorf, Switzerland.ORCID https://orcid.org/0000-0002-4831-6958

Funding

National Key Research and Development Program of China 2021YFC3201003National Key Research and Development Program of China 2022YFC32021001National Natural Science Foundation of China 42507382Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung 310030_197410Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung 31003A_173074
6 · The paper itself

Abstract

The analysis of environmental DNA (eDNA) has revolutionized biodiversity assessments in aquatic ecosystems, enabling non-invasive monitoring of fish communities across diverse regions. However, the global comparability of these eDNA datasets remains ambiguous due to heterogeneous sampling protocols and bioinformatic workflows across studies, making it difficult to assess how robust and comparable the biodiversity patterns inferred from these datasets actually are. Here, we conducted a meta-analysis of 58 riverine fish eDNA metabarcoding studies, covering 1818 sampling sites worldwide, to evaluate the robustness of eDNA-derived biodiversity patterns. We found that species richness estimates and metrics of community structure derived under a common bioinformatic workflow were overall consistent with those of original analyses, despite the relatively high variability in bioinformatic analyses in the respective original studies. Contrastingly, congruence of species identity varied more extensively across datasets, mostly reflecting different completeness and regional relevance of reference databases. Restricting taxonomic assignment to basin-specific species pools improved species identification accuracy, while datasets lacking publicly accessible or well-curated reference data were more prone to mismatches. Year of sampling had a positive effect on taxonomic congruence, such that more recent studies showed increased robustness, also reflecting improved reference database coverage and enhanced species-level identification over time and overall method congruence in more recent years. Overall, the suitability and potential of eDNA for global biodiversity monitoring is corroborating overall robust biodiversity estimates, irrespective of the bioinformatic approaches. Our study underlines the effectiveness and need for further harmonization of bioinformatic workflows and strengthened region-specific reference databases for improved taxonomic resolution and comparability across studies.

Indexed as

BiodiversityDNA, EnvironmentalFishesAnimalsComputational BiologyDNA Barcoding, TaxonomicEcosystemRiversDNA, Environmentalbioinformaticsenvironmental DNAfish diversitymeta‐analysismetabarcodingriver ecosystem

Identifiers

PMID41999115
PMCPMC13090749

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.