Evidence map›Paper›PMID 41998067›Full record

ArticleScientific reports2026

Genomic and metabolomic insight into the antagonistic potential of endophytic Xanthomonas sacchari KmAL21 against Fusarium odoratissimum.

Ahmad Suparmin, Lidia Ester Cahyani, Tri Rini Nuringtyas, Muhammad Saifur Rohman, Hanifrahmawan Sudibyo, Donny Widianto, Nur Akbar Arrofatullah

Abstract read
In one paragraph

Article in Scientific reports, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Ahmad SuparminDepartment of Agricultural Microbiology, Faculty of Agriculture, Universitas Gadjah Mada, Special Region of Yogyakarta, 55281, Indonesia. ahmad.suparmin@ugm.ac.id.
Lidia Ester CahyaniPT. Widya Life Science, Palagan Tentara Pelajar No.15 Street, Sleman, Special Region of Yogyakarta, 5558, Indonesia.
Tri Rini NuringtyasResearch Center for Biotechnology, Universitas Gadjah Mada, Special Region of Yogyakarta, 55281, Indonesia.
Muhammad Saifur RohmanDepartment of Agricultural Microbiology, Faculty of Agriculture, Universitas Gadjah Mada, Special Region of Yogyakarta, 55281, Indonesia.
Hanifrahmawan SudibyoChemical Engineering Department, Faculty of Engineering, Universitas Gadjah Mada, Special Region of Yogyakarta, 55281, Indonesia.
Donny WidiantoDepartment of Agricultural Microbiology, Faculty of Agriculture, Universitas Gadjah Mada, Special Region of Yogyakarta, 55281, Indonesia.
Nur Akbar ArrofatullahDepartment of Agricultural Microbiology, Faculty of Agriculture, Universitas Gadjah Mada, Special Region of Yogyakarta, 55281, Indonesia.

Funding

Doctoral Competency Improvement Program of Universitas Gadjah Mada 7743/UN1. P.II/Dit-Lit/PT.01.03/2023
6 · The paper itself

Abstract

This study characterizes a novel endophytic strain, Xanthomonas sacchari KmAL21 isolated from banana (Musa acuminata) tissue culture, an unconventional host for this species, which is typically associated with sugarcane and rice. Unlike most Xanthomonas species known for their pathogenicity, this strain exhibits a non-pathogenic, endophytic lifestyle in banana and demonstrates antagonistic activity, inhibiting Fusarium odoratissimum (Fo), the causative agent of Fusarium wilt of banana by 48.3% in co-culture and up to 88.42% with cell-free supernatant (CFS) at 5% concentration after 7 days of incubation. Scanning electron microscopy revealed that the development of fungal hyphae and the generation of conidia were disrupted. Integrated genomic and metabolomic analyses identified a 4.94 million base pairs genome size with 4,077 protein-coding genes, encoding nonribosomal peptide synthase (NRPS)-dependent siderophore and antifungal metabolites, including benzoic acid derivates. Eleven biosynthetic gene clusters, including those for xenotetrapeptide was identified. Phylogenomic analysis confirmed KmAL21's close relation to Xanthomonas sacchari CFBP 4641

Indexed as

AntibiosisEndophytesFusariumXanthomonasGenome, BacterialGenomicsMetabolomicsMultigene FamilyMusaPhylogenyPlant DiseasesAntagonistic activityEndophyteFusarium wiltMetabogenomicXanthomonas sacchari

Identifiers

PMID41998067
PMCPMC13250131

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.