Evidence map›Paper›PMID 41997957›Full record

ArticleNature communications2026

MeCP2 requires interactions with nucleosome linker DNA to read chromatin DNA methylation.

James A Watson, Beatrice K Alexander-Howden, Theo S Hall, Martin A Wear, Finlay McGhie, Gillian Clifford, Hannah Wapenaar, Juan Zou, Adrian Bird, Marcus D Wilson

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

James A WatsonCentre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, UK.ORCID http://orcid.org/0000-0002-5691-1829
Beatrice K Alexander-HowdenCentre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, UK.ORCID http://orcid.org/0000-0001-7690-8478
Theo S HallCentre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, UK.
Martin A WearInstitute of Quantitative Biology, Biochemistry and Biotechnology, School of Biological Sciences, University of Edinburgh, Edinburgh, UK.
Finlay McGhieCentre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, UK.ORCID http://orcid.org/0009-0001-0358-0763
Gillian CliffordCentre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, UK.
Hannah WapenaarCentre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, UK.
Juan ZouCentre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, UK.ORCID http://orcid.org/0000-0003-2594-6217
Adrian BirdCentre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, UK. a.bird@ed.ac.uk.ORCID http://orcid.org/0000-0002-8600-0372
Marcus D WilsonCentre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, UK. marcus.wilson@ed.ac.uk.ORCID http://orcid.org/0000-0001-9551-5514

Funding

RCUK | Medical Research Council (MRC) T029471/1Wellcome Trust 203149Wellcome Trust 210493Wellcome Trust 218470
6 · The paper itself

Abstract

Methyl-CpG-binding protein 2 (MeCP2) is a clinically important epigenetic reader that is essential for neuronal function, but how it binds methylated DNA within the protein-DNA complexes that comprise chromatin is unclear. Using designer nucleosomes, we observe that MeCP2 is able to engage methylated DNA at multiple sites on the nucleosome surface. Surprisingly, even methyl-cytosine placed in bent, histone-contacting, core nucleosomal DNA can be bound. However, we find that this ability requires interactions with inter-nucleosomal linker DNA. Nucleosome core DNA methylation reading involves regions of MeCP2 beyond its canonical methyl-CpG binding domain and we define a novel DNA-binding region in MeCP2 that is required for this function. We further demonstrate that histone H1 antagonises the MeCP2-nucleosome interactions by competing for linker DNA. Overall, our study reveals that MeCP2 gains access to methylated chromatinised DNA, independent of nucleosome structure, via essential nonspecific interactions with linker DNA.

Indexed as

ChromatinDNADNA MethylationMethyl-CpG-Binding Protein 2NucleosomesAnimalsBinding SitesCpG IslandsHistonesHumansProtein BindingChromatinDNAHistonesMECP2 protein, humanMecp2 protein, mouseMethyl-CpG-Binding Protein 2Nucleosomes

Identifiers

PMID41997957
PMCPMC13276077

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.